Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq7053 125 1e-23 seq11739 118 2e-21 seq9538 113 7e-20 seq646 95.1 2e-14 seq10734 93.3 6e-14 seq9639 93.3 6e-14 seq6415 93.3 6e-14 >seq7053 Length=464797 Score = 125 bits (138), Expect = 1e-23 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGA--TT 197723 || || || || || || || |||| || ||||| || ||||||||| || || || Sbjct 70843 GGAGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTT 70784 Query 197724 TGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATG 197783 | || ||||||| ||| | |||| || ||||| || || ||||| || || ||||||| Sbjct 70783 TCCG--AAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATG 70726 Query 197784 AACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTA 197843 || ||||||||||||| | || |||||||| | | ||||| | || ||||||||| Sbjct 70725 AATTGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTT 70666 Query 197844 CCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAAT 197903 |||| ||| || ||| || || || || | || ||||| | |||||||| || | Sbjct 70665 CCATCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGT 70606 Query 197904 GG 197905 || Sbjct 70605 GG 70604 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || || ||||||||||| ||| ||| ||| | |||||||||||||||||||||||| Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364 Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTA---ACATGGTGCCGGGC 198445 || || || || | || | ||||| || |||||| | | || |||||| Sbjct 70363 GCCTCCTATGCGCTGCTGACACTGATGGTGGC---GCAGGTCACGGGCCTGAAGCCGGGT 70307 Query 198446 GATTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAG 198505 |||||| || ||| |||||| | ||| |||| | |||||| | |||||||| | Sbjct 70306 GATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGGCGCGG 70247 Query 198506 CTCCAGCTGACGCG 198519 || ||| |||| || Sbjct 70246 CTGCAGATGACCCG 70233 >seq11739 Length=237542 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 197642 ATTCTGGACGAGGGTCATGTTAAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTT 197701 || || ||||| || || ||||| ||||||||||| ||||| || | |||||| ||| Sbjct 9448 ATCCTAGACGATGGCGGTGACAAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTT 9389 Query 197702 GGACGCCAGATGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTC 197761 || | || ||||||||||| ||| ||||| || ||| || | || ||||| ||| | Sbjct 9388 GGTCATCAAATGCGTTTTGACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATT 9329 Query 197762 CACCTGCGTTCTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAA 197821 || | || || ||| | |||||||||||||||||| | || || |||||| || Sbjct 9328 CATTTCCGCTCCATTGTGATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAA 9269 Query 197822 TATCTGGAAGATAACGGCGTTACCATTTGG 197851 ||||| |||| || ||| | |||||| Sbjct 9268 TATCTTAAAGACAATAAAGTTTCGATTTGG 9239 >seq9538 Length=646221 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 ||||| || || || || || || | || || || || ||||||||||| ||| || Sbjct 486498 GGCGACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTG 486557 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 | || |||||| | | || || |||||||| |||||| || || ||||| ||| Sbjct 486558 GCCGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAA 486617 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 || |||||||| || || |||||||||| |||||||||| | || ||||||| ||| Sbjct 486618 CTTCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACC 486677 Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 || ||| |||||| |||| || || | || ||||| | ||||| Sbjct 486678 ATCTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGG 486727 >seq646 Length=687 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || || |||||||| || ||| |||||| | |||||||||||||| ||||||||| Sbjct 354 CTGTCCTGCCAGCTCTACCAGCGCTCGGCGGATGTGTTCCTCGGCGTGCCCTTCAACATC 295 Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGT---TAACATGGTGCCGGGC 198445 ||||| || || || || |||| | | | |||||| | | || ||| ||| Sbjct 294 GCGTCCTATGC---CCTGCTGACCATGATGGTCGCGCAGGTCACTGGCCTGAAGCCCGGC 238 Query 198446 GATTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAG 198505 || ||| | || ||||||| | || ||||| || |||||||| |||||||| | Sbjct 237 GAGTTCGTGCATACCCTCGGTGACGCGCACCTCTATTCCAATCATCTCGAGCAGGCGCGG 178 Query 198506 CTCCAGCTG 198514 || |||||| Sbjct 177 CTGCAGCTG 169 >seq10734 Length=9239 Score = 93.3 bits (102), Expect = 6e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 ||| | ||||| || || || || || | || ||||| | ||||||||||| | Sbjct 1270 AAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAAC 1329 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 || |||| |||||| | ||||| || ||||| || |||||||| || || ||||| Sbjct 1330 CTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCAC 1389 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTT 197842 || |||||||||||||| | || || ||||||| | || ||| | || ||| || Sbjct 1390 GAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTA 1449 Query 197843 ACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 || ||| |||||| || || ||||| |||| ||||| Sbjct 1450 CGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCC 1493 >seq9639 Length=103419 Score = 93.3 bits (102), Expect = 6e-14 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||| || || ||||| ||||| | ||||| ||||| || ||||||||||| Sbjct 3871 TGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 3812 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454 ||||| | || |||||| | |||||||| || ||| | |||||| ||||| Sbjct 3811 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCATC 3752 Query 198455 TGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTG 198514 ||||| ||||| ||| || ||||| || || | |||| | || ||||||| Sbjct 3751 TGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGACCCAGCTG 3692 Query 198515 ACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTC 198574 |||| |||| || | | |||| || |||||||| || || || |||||| Sbjct 3691 GCGCGCCAGCCCTTCGCCTACCCGACGCTTCAGATCAAGCGCCGGCCCGACTCCATCTTC 3632 Query 198575 GATTATAAATTCGAAGATTTTGAGATCGTTGGGTATCAG 198613 | || | | ||| || || ||| |||| || || ||| Sbjct 3631 GGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAG 3593 >seq6415 Length=247467 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 ||||| || || || || || ||||| || || || || ||||| || || ||| || Sbjct 52966 GGCGACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTG 53025 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 || || |||||| | | || | ||||| || |||||||| || || ||| || Sbjct 53026 GCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAG 53085 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 |||||||||||||| | || || ||||||| | || || | || |||||||| | Sbjct 53086 CTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGC 53145 Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 || ||| |||||| || ||||| || | |||||||| Sbjct 53146 ATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCC 53186 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||||||||||||||| || || | ||| | || ||||||||||||||||| || Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454 ||||| | || | ||||| ||| || || | ||| ||||||||| ||| | Sbjct 53452 TACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTTCGTC 53511 Query 198455 TGGACGGGCGGTGACACACATCTCTACTCT-AATCATCTGGAGCAGGCCAAGCTCCAGCT 198513 || ||| ||| | || ||||| ||| || || || || |||||| ||||| Sbjct 53512 CACACCTTCGGCGACGCCCACCTCTA-TCTGAACCACCTCGACCAGGCCCGCGAACAGCT 53570 Query 198514 GACGCGTGAGCCGTTACCTTTACCGA 198539 ||| || ||||| | || || |||| Sbjct 53571 GACCCGCGAGCCCTACCCGTTCCCGA 53596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769048808919720