Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027402.1
Length=240413
Score E
Sequences producing significant alignments: (Bits) Value
seq7053 125 1e-23
seq11739 118 2e-21
seq9538 113 7e-20
seq646 95.1 2e-14
seq10734 93.3 6e-14
seq9639 93.3 6e-14
seq6415 93.3 6e-14
>seq7053
Length=464797
Score = 125 bits (138), Expect = 1e-23
Identities = 174/242 (72%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGA--TT 197723
|| || || || || || || |||| || ||||| || ||||||||| || || ||
Sbjct 70843 GGAGACCGCACCGGCACGGGTACGCGCTCGGTCTTCGGTTACCAGATGCGCTTCGACCTT 70784
Query 197724 TGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATG 197783
| || ||||||| ||| | |||| || ||||| || || ||||| || || |||||||
Sbjct 70783 TCCG--AAGGTTTTCCGGTTCTCACCACCAAGAAGCTGCATCTGCGCTCCATCATCCATG 70726
Query 197784 AACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTA 197843
|| ||||||||||||| | || |||||||| | | ||||| | || |||||||||
Sbjct 70725 AATTGCTGTGGTTCCTGAAGGGCGATACCAATATCGCCTATCTCAAGGAAAACGGCGTTT 70666
Query 197844 CCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAAT 197903
|||| ||| || ||| || || || || | || ||||| | |||||||| || |
Sbjct 70665 CCATCTGGGACGAATGGGCCGACGAGAACGGCGATCTCGGCCCGGTCTATGGTGCGCAGT 70606
Query 197904 GG 197905
||
Sbjct 70605 GG 70604
Score = 98.7 bits (108), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388
|| || || ||||||||||| ||| ||| ||| | ||||||||||||||||||||||||
Sbjct 70423 CTGTCCTGCCAGCTCTATCAGCGCTCTGCCGATATCTTCCTCGGCGTGCCGTTCAACATC 70364
Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTA---ACATGGTGCCGGGC 198445
|| || || || | || | ||||| || |||||| | | || ||||||
Sbjct 70363 GCCTCCTATGCGCTGCTGACACTGATGGTGGC---GCAGGTCACGGGCCTGAAGCCGGGT 70307
Query 198446 GATTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAG 198505
|||||| || ||| |||||| | ||| |||| | |||||| | |||||||| |
Sbjct 70306 GATTTCGTTCATACGCTGGGTGACGCGCATATCTATGCCAATCATTTCGAGCAGGCGCGG 70247
Query 198506 CTCCAGCTGACGCG 198519
|| ||| |||| ||
Sbjct 70246 CTGCAGATGACCCG 70233
>seq11739
Length=237542
Score = 118 bits (130), Expect = 2e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 197642 ATTCTGGACGAGGGTCATGTTAAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTT 197701
|| || ||||| || || ||||| ||||||||||| ||||| || | |||||| |||
Sbjct 9448 ATCCTAGACGATGGCGGTGACAAAGGTGATCGTACTGGTACAGGTACTCGTTCTGTATTT 9389
Query 197702 GGACGCCAGATGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTC 197761
|| | || ||||||||||| ||| ||||| || ||| || | || ||||| ||| |
Sbjct 9388 GGTCATCAAATGCGTTTTGACTTGTCAAAAGGGTTTCCGCTACTAACCACTAAAAAAATT 9329
Query 197762 CACCTGCGTTCTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAA 197821
|| | || || ||| | |||||||||||||||||| | || || |||||| ||
Sbjct 9328 CATTTCCGCTCCATTGTGATTGAACTGCTGTGGTTCCTAAAAGGCGACACCAACGTTCAA 9269
Query 197822 TATCTGGAAGATAACGGCGTTACCATTTGG 197851
||||| |||| || ||| | ||||||
Sbjct 9268 TATCTTAAAGACAATAAAGTTTCGATTTGG 9239
>seq9538
Length=646221
Score = 113 bits (124), Expect = 7e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725
||||| || || || || || || | || || || || ||||||||||| ||| ||
Sbjct 486498 GGCGACCGCACCGGCACCGGCACACGCTCGGTGTTCGGCTATCAGATGCGTTTCGATCTG 486557
Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785
| || |||||| | | || || |||||||| |||||| || || ||||| |||
Sbjct 486558 GCCGACGGCTTCCCGGTGCTTACCACCAAGAAACTGCACCTGAAGTCGATCATCCACGAA 486617
Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845
|| |||||||| || || |||||||||| |||||||||| | || ||||||| |||
Sbjct 486618 CTTCTGTGGTTTCTGGCCGGCGATACCAACATCAAATATCTGAACGACCACGGCGTCACC 486677
Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895
|| ||| |||||| |||| || || | || ||||| | |||||
Sbjct 486678 ATCTGGGACGAGTGGGCGGATGCCAAGGGCGATCTCGGCCCGGTCTATGG 486727
>seq646
Length=687
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/189 (71%), Gaps = 6/189 (3%)
Strand=Plus/Minus
Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388
|| || || |||||||| || ||| |||||| | |||||||||||||| |||||||||
Sbjct 354 CTGTCCTGCCAGCTCTACCAGCGCTCGGCGGATGTGTTCCTCGGCGTGCCCTTCAACATC 295
Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGT---TAACATGGTGCCGGGC 198445
||||| || || || || |||| | | | |||||| | | || ||| |||
Sbjct 294 GCGTCCTATGC---CCTGCTGACCATGATGGTCGCGCAGGTCACTGGCCTGAAGCCCGGC 238
Query 198446 GATTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAG 198505
|| ||| | || ||||||| | || ||||| || |||||||| |||||||| |
Sbjct 237 GAGTTCGTGCATACCCTCGGTGACGCGCACCTCTATTCCAATCATCTCGAGCAGGCGCGG 178
Query 198506 CTCCAGCTG 198514
|| ||||||
Sbjct 177 CTGCAGCTG 169
>seq10734
Length=9239
Score = 93.3 bits (102), Expect = 6e-14
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722
||| | ||||| || || || || || | || ||||| | ||||||||||| |
Sbjct 1270 AAAAGTGATCGCACCGGCACCGGCACCCGCAGCGTGTTTGGCTGGCAGATGCGTTTCAAC 1329
Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782
|| |||| |||||| | ||||| || ||||| || |||||||| || || |||||
Sbjct 1330 CTGGCCGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCAC 1389
Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTT 197842
|| |||||||||||||| | || || ||||||| | || ||| | || ||| ||
Sbjct 1390 GAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTA 1449
Query 197843 ACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886
|| ||| |||||| || || ||||| |||| |||||
Sbjct 1450 CGGATCTGGGACGAGTGGGCCGACGACAATGGCGACCTCGGCCC 1493
>seq9639
Length=103419
Score = 93.3 bits (102), Expect = 6e-14
Identities = 188/279 (67%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394
|| ||||| || || ||||| ||||| | ||||| ||||| || |||||||||||
Sbjct 3871 TGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 3812
Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454
||||| | || |||||| | |||||||| || ||| | |||||| |||||
Sbjct 3811 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGGAGGTGGGCGACTTCATC 3752
Query 198455 TGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTG 198514
||||| ||||| ||| || ||||| || || | |||| | || |||||||
Sbjct 3751 TGGACCGGCGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGACCCAGCTG 3692
Query 198515 ACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTC 198574
|||| |||| || | | |||| || |||||||| || || || ||||||
Sbjct 3691 GCGCGCCAGCCCTTCGCCTACCCGACGCTTCAGATCAAGCGCCGGCCCGACTCCATCTTC 3632
Query 198575 GATTATAAATTCGAAGATTTTGAGATCGTTGGGTATCAG 198613
| || | | ||| || || ||| |||| || || |||
Sbjct 3631 GGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAG 3593
>seq6415
Length=247467
Score = 93.3 bits (102), Expect = 6e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725
||||| || || || || || ||||| || || || || ||||| || || ||| ||
Sbjct 52966 GGCGACCGCACGGGCACCGGCACGCTGGGCGTGTTCGGCCGGCAGATCCGCTTCGATCTG 53025
Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785
|| || |||||| | | || | ||||| || |||||||| || || ||| ||
Sbjct 53026 GCCAAGGGCTTCCCGGTTCTGACCTCCAAGAAGCTGCACCTGCGCTCGATCATCATCGAG 53085
Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845
|||||||||||||| | || || ||||||| | || || | || |||||||| |
Sbjct 53086 CTGCTGTGGTTCCTGAAGGGCGACACCAACATCGCCTACCTCAAGGACAACGGCGTGCGC 53145
Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886
|| ||| |||||| || ||||| || | ||||||||
Sbjct 53146 ATCTGGGACGAGTGGGCCGACGAAAACGGCGATCTTGGCCC 53186
Score = 86.0 bits (94), Expect = 1e-11
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394
|| ||||||||||||||||| || || | ||| | || ||||||||||||||||| ||
Sbjct 53392 TGCCAGCTCTATCAACGCAGCGCCGACGTGTTCTTAGGGGTGCCGTTCAACATCGCCTCC 53451
Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454
||||| | || | ||||| ||| || || | ||| ||||||||| ||| |
Sbjct 53452 TACGCCCTGCTGACCCTGATGGTCGCCAAGGTCGTCGGCCTGGAGCCGGGCGAGTTCGTC 53511
Query 198455 TGGACGGGCGGTGACACACATCTCTACTCT-AATCATCTGGAGCAGGCCAAGCTCCAGCT 198513
|| ||| ||| | || ||||| ||| || || || || |||||| |||||
Sbjct 53512 CACACCTTCGGCGACGCCCACCTCTA-TCTGAACCACCTCGACCAGGCCCGCGAACAGCT 53570
Query 198514 GACGCGTGAGCCGTTACCTTTACCGA 198539
||| || ||||| | || || ||||
Sbjct 53571 GACCCGCGAGCCCTACCCGTTCCCGA 53596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 769048808919720
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