Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8995 316 2e-81 seq11332 156 3e-33 seq7661 107 2e-18 seq13887 95.1 1e-14 seq608 86.0 5e-12 >seq8995 Length=8301158 Score = 316 bits (350), Expect = 2e-81 Identities = 654/960 (68%), Gaps = 25/960 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| |||| Sbjct 6972248 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 6972189 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| || || || || | | || ||| | ||||| ||| || Sbjct 6972188 TCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 6972131 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | ||||||| || || |||| || ||||| || || || | Sbjct 6972130 TGAAGCCTGAGGAGAGATATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATG 6972071 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||| ||||| |||||| ||||||||||| |||||| || || Sbjct 6972070 GCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCT 6972012 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 | ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 6972011 CCTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 6971952 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || || || ||||| |||||| | || | | | | || ||||| || || Sbjct 6971951 CTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAG 6971892 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAA--AT 44113 || | ||| | || | || ||||| |||||| | |||| | ||| | Sbjct 6971891 ACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAAAGAA 6971832 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||||| | || || ||||| | ||||||||||| |||||||| || Sbjct 6971831 GCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGT 6971772 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || |||||| | ||||| ||| | ||||||||||| |||||||||| | |||||||| Sbjct 6971771 TCTTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCC 6971712 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||||| | || || | ||||| || || || || || ||| | ||| || | | | Sbjct 6971711 AATGAACTTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAA 6971652 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | | | || ||||| ||| | | | || || | || | ||||| Sbjct 6971651 CACCT-GTTG--CACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTT 6971595 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | ||||||||| || || | || || | ||||| || | || || ||||| || Sbjct 6971594 AGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGC 6971535 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 || ||||||||| || || || || | | | |||||| | | | |||| ||||| | Sbjct 6971534 AC-TTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCT- 6971477 Query 44473 CGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 | | || | || ||| |||| |||||||| ||||||||||||||||| ||| Sbjct 6971476 ---TTAGCAAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGG 6971420 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 | || || || ||||| ||||| || | || | || ||||| ||||||| || ||| Sbjct 6971419 AGGGGAAGACTAACTTCTTTGAGAAGAGAGTAAGCGAGAATCAGAGAATGGGAGTGATGT 6971360 Query 44589 TAA---CAAGTGACAATAAATTTACTACGGATGAAGATTTCTAATTAATCAGAAAACTTG 44645 || ||| || ||| ||||| ||||| || |||||| | | | ||| || || Sbjct 6971359 CAAATCCAACAGAGAATTCCTTTACCTTGGATGCCGACTTCTAAGTGACCTGAAGACGTG 6971300 Score = 176 bits (194), Expect = 4e-39 Identities = 325/471 (69%), Gaps = 13/471 (3%) Strand=Plus/Minus Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 ||||||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 6968955 TGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGC 6968896 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 | | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| | Sbjct 6968895 GTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACT 6968836 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGG 44301 || || | ||||| || || || || || ||| | ||| || | | | | || | Sbjct 6968835 TATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAACACCT-GT 6968777 Query 44302 AGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 | | || ||||| ||| | | | || || | || | ||||| | |||||| Sbjct 6968776 TG--CACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAGA 6968719 Query 44362 ACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGA 44420 ||| || || | || || | ||||| || | || || ||||| || || ||||| Sbjct 6968718 ACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCAC-TTTGA 6968660 Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAAC 44480 |||| || || || || | | | |||||| | | | |||| ||||| | | | | Sbjct 6968659 TGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCT----TTAGC 6968604 Query 44481 ACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 | | || ||| |||| |||||||| ||||||||||||||||| |||| || || Sbjct 6968603 AAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAG 6968544 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || ||||| ||||| || | || || || |||||| ||||||| || ||| Sbjct 6968543 ACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 6968493 >seq11332 Length=2136832 Score = 156 bits (172), Expect = 3e-33 Identities = 304/445 (68%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300 |||| || |||| || || | ||| |||| || |||||| | |||||| || || | Sbjct 1308474 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTAAATCCTGAATGGCCAG 1308533 Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360 | | |||| ||| || |||| || || | ||||||| | ||||| | Sbjct 1308534 GAACATGCATCCACTGAATGTCCATGCCCCGCGCCAGCCGCTCCAGCTCCGCGAAGTCCT 1308593 Query 77361 CCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTCT 77417 |||| ||| || || ||||| | ||| | ||||||||| |||||||||||| || Sbjct 1308594 CCTTATTGGTCACCT---CCTCC-CAGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCCT 1308649 Query 77418 TAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCT 77477 | ||||| | || | ||||||||||| ||||||||||| ||||||| |||||||| Sbjct 1308650 TCACCCAGGTGGTGATGCCATTGATGGTAAACATGCTGTCCGTGTAGAGAACCAGCTTAG 1308709 Query 77478 TGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCT 77537 |||| | | ||| |||||| | | |||||| | || || || || || || | | Sbjct 1308710 TGATGTCTTGAGCCTTAGCTTGCTCGATGGCTTTGCAGGCTGCATGAATCTCCGCCCTTT 1308769 Query 77538 GGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAAT 77597 ||||||| |||||||| ||||| | | ||||| | || || ||||| | Sbjct 1308770 GGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCCAGT 1308829 Query 77598 ATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGT 77657 |||||| || || || | || || | ||||| |||| ||||||||||||| Sbjct 1308830 ATACGCTGATTCCTGCGTGAGCCCTCTTGCGCCCGTTACTGGAGCAGCAGCCGTCAGTGT 1308889 Query 77658 AGACCACCACGGCGTCACCCATGTA 77682 |||| ||||| | ||| |||||||| Sbjct 1308890 AGACGACCACAGAGTCCCCCATGTA 1308914 >seq7661 Length=1898141 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 818464 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 818523 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| | Sbjct 818524 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTT 818583 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 818584 ATTAGCAGAGATGA 818597 Score = 98.7 bits (108), Expect = 8e-16 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || | ||||| ||||| || |||||||| Sbjct 816813 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCCTTGTTTCTATGGCTTCCAAATTGC 816871 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || || || |||||| Sbjct 816872 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTATATTAAAGAT 816929 >seq13887 Length=3975994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 2223525 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 2223466 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 2223465 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 2223406 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | |||||||| || || ||||| ||||| ||| Sbjct 2223405 GATGGTGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 2223364 >seq608 Length=3558542 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 2098885 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 2098944 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 2098945 AACGAGTTTCAGAGTATCAGCG 2098966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397383054279295