Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 316 2e-81
seq11332 156 3e-33
seq7661 107 2e-18
seq13887 95.1 1e-14
seq608 86.0 5e-12
>seq8995
Length=8301158
Score = 316 bits (350), Expect = 2e-81
Identities = 654/960 (68%), Gaps = 25/960 (3%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| ||||
Sbjct 6972248 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 6972189
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817
|| ||||||||||| || || || || | | || ||| | ||||| ||| ||
Sbjct 6972188 TCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 6972131
Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877
| || || | || | | ||||||| || || |||| || ||||| || || || |
Sbjct 6972130 TGAAGCCTGAGGAGAGATATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATG 6972071
Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936
| ||||| |||||||| ||||| |||||| ||||||||||| |||||| || ||
Sbjct 6972070 GCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCT 6972012
Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996
| ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct 6972011 CCTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 6971952
Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056
|| || || || ||||| |||||| | || | | | | || ||||| || ||
Sbjct 6971951 CTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAG 6971892
Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAA--AT 44113
|| | ||| | || | || ||||| |||||| | |||| | ||| |
Sbjct 6971891 ACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGCTGGACTGGGGACAAAGAA 6971832
Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173
| | | | ||||||||| | || || ||||| | ||||||||||| |||||||| ||
Sbjct 6971831 GCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGT 6971772
Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233
|| |||||| | ||||| ||| | ||||||||||| |||||||||| | ||||||||
Sbjct 6971771 TCTTTTGCGTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCC 6971712
Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293
||||| | || || | ||||| || || || || || ||| | ||| || | | |
Sbjct 6971711 AATGAACTTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAA 6971652
Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353
| || | | | || ||||| ||| | | | || || | || | |||||
Sbjct 6971651 CACCT-GTTG--CACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTT 6971595
Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412
| ||||||||| || || | || || | ||||| || | || || ||||| ||
Sbjct 6971594 AGGATAGAACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGC 6971535
Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472
|| ||||||||| || || || || | | | |||||| | | | |||| ||||| |
Sbjct 6971534 AC-TTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCT- 6971477
Query 44473 CGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528
| | || | || ||| |||| |||||||| ||||||||||||||||| |||
Sbjct 6971476 ---TTAGCAAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGG 6971420
Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588
| || || || ||||| ||||| || | || | || ||||| ||||||| || |||
Sbjct 6971419 AGGGGAAGACTAACTTCTTTGAGAAGAGAGTAAGCGAGAATCAGAGAATGGGAGTGATGT 6971360
Query 44589 TAA---CAAGTGACAATAAATTTACTACGGATGAAGATTTCTAATTAATCAGAAAACTTG 44645
|| ||| || ||| ||||| ||||| || |||||| | | | ||| || ||
Sbjct 6971359 CAAATCCAACAGAGAATTCCTTTACCTTGGATGCCGACTTCTAAGTGACCTGAAGACGTG 6971300
Score = 176 bits (194), Expect = 4e-39
Identities = 325/471 (69%), Gaps = 13/471 (3%)
Strand=Plus/Minus
Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181
||||||||| | || || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 6968955 TGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGC 6968896
Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241
| | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| |
Sbjct 6968895 GTCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACT 6968836
Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGG 44301
|| || | ||||| || || || || || ||| | ||| || | | | | || |
Sbjct 6968835 TATTAGCAGAGATGAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAACACCT-GT 6968777
Query 44302 AGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361
| | || ||||| ||| | | | || || | || | ||||| | ||||||
Sbjct 6968776 TG--CACAAACCTTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAGA 6968719
Query 44362 ACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGA 44420
||| || || | || || | ||||| || | || || ||||| || || |||||
Sbjct 6968718 ACAGGAGTTCCTTACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCAC-TTTGA 6968660
Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAAC 44480
|||| || || || || | | | |||||| | | | |||| ||||| | | | |
Sbjct 6968659 TGAAGCAGTACATCGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCT----TTAGC 6968604
Query 44481 ACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536
| | || ||| |||| |||||||| ||||||||||||||||| |||| || ||
Sbjct 6968603 AAGGTTTTCAAAGTAGAAAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAG 6968544
Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
|| ||||| ||||| || | || || || |||||| ||||||| || |||
Sbjct 6968543 ACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 6968493
>seq11332
Length=2136832
Score = 156 bits (172), Expect = 3e-33
Identities = 304/445 (68%), Gaps = 7/445 (2%)
Strand=Plus/Plus
Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300
|||| || |||| || || | ||| |||| || |||||| | |||||| || || |
Sbjct 1308474 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTAAATCCTGAATGGCCAG 1308533
Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360
| | |||| ||| || |||| || || | ||||||| | ||||| |
Sbjct 1308534 GAACATGCATCCACTGAATGTCCATGCCCCGCGCCAGCCGCTCCAGCTCCGCGAAGTCCT 1308593
Query 77361 CCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTCT 77417
|||| ||| || || ||||| | ||| | ||||||||| |||||||||||| ||
Sbjct 1308594 CCTTATTGGTCACCT---CCTCC-CAGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCCT 1308649
Query 77418 TAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCT 77477
| ||||| | || | ||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1308650 TCACCCAGGTGGTGATGCCATTGATGGTAAACATGCTGTCCGTGTAGAGAACCAGCTTAG 1308709
Query 77478 TGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCT 77537
|||| | | ||| |||||| | | |||||| | || || || || || || | |
Sbjct 1308710 TGATGTCTTGAGCCTTAGCTTGCTCGATGGCTTTGCAGGCTGCATGAATCTCCGCCCTTT 1308769
Query 77538 GGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAAT 77597
||||||| |||||||| ||||| | | ||||| | || || ||||| |
Sbjct 1308770 GGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCCAGT 1308829
Query 77598 ATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGT 77657
|||||| || || || | || || | ||||| |||| |||||||||||||
Sbjct 1308830 ATACGCTGATTCCTGCGTGAGCCCTCTTGCGCCCGTTACTGGAGCAGCAGCCGTCAGTGT 1308889
Query 77658 AGACCACCACGGCGTCACCCATGTA 77682
|||| ||||| | ||| ||||||||
Sbjct 1308890 AGACGACCACAGAGTCCCCCATGTA 1308914
>seq7661
Length=1898141
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| | || || ||||| | ||||||||||| |||||||| || || ||||||
Sbjct 818464 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 818523
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| |
Sbjct 818524 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTT 818583
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 818584 ATTAGCAGAGATGA 818597
Score = 98.7 bits (108), Expect = 8e-16
Identities = 94/118 (80%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||||| || || | ||||| ||||| || ||||||||
Sbjct 816813 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCCTTGTTTCTATGGCTTCCAAATTGC 816871
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || || || || || ||||||
Sbjct 816872 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTATATTAAAGAT 816929
>seq13887
Length=3975994
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 2223525 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 2223466
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | || || ||||||||||||||||| || || ||||| ||| |
Sbjct 2223465 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 2223406
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| ||||| | |||||||| || || ||||| ||||| |||
Sbjct 2223405 GATGGTGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 2223364
>seq608
Length=3558542
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 2098885 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 2098944
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 2098945 AACGAGTTTCAGAGTATCAGCG 2098966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397383054279295
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