Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq9853 91.5 1e-13
seq12661 82.4 6e-11
>seq9853
Length=4041771
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || |||| || | |||| || | || | ||||| || |||||||||||
Sbjct 359781 TGCCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTG 359840
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| |||| | || | |||||||| |||| | | || |||||||| || || || |
Sbjct 359841 ACAGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTG 359900
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| | || ||| ||| ||| | |||| | ||||| ||| || |
Sbjct 359901 GGATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGA 359960
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253
| || ||||| || | |||||| |||| || ||||||||||| ||||| ||||
Sbjct 359961 CCTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCATCTCTGC 360015
>seq12661
Length=3984070
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| || ||||||||||| || || | | || || |||||||| ||
Sbjct 2676651 GTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTCCAGCTGTTTGCCC 2676592
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || |||| ||| || || || || | ||||| || || ||| ||| |||
Sbjct 2676591 GCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 2676532
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || |||||| ||| || || || || || || | ||||||||||| ||
Sbjct 2676531 ACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 2676472
Query 27231 TTCACAAAGATTTGCATAGCTGC 27253
||||||||||| ||||| ||||
Sbjct 2676471 TTCACAAAGATCTGCATCTCTGC 2676449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424856411125608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |