Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9853 91.5 1e-13 seq12661 82.4 6e-11 >seq9853 Length=4041771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| || | || | ||||| || ||||||||||| Sbjct 359781 TGCCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTG 359840 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || | |||||||| |||| | | || |||||||| || || || | Sbjct 359841 ACAGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTG 359900 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| | || ||| ||| ||| | |||| | ||||| ||| || | Sbjct 359901 GGATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGA 359960 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || ||||| || | |||||| |||| || ||||||||||| ||||| |||| Sbjct 359961 CCTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCATCTCTGC 360015 >seq12661 Length=3984070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || ||||||||||| || || | | || || |||||||| || Sbjct 2676651 GTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTCCAGCTGTTTGCCC 2676592 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||| ||| || || || || | ||||| || || ||| ||| ||| Sbjct 2676591 GCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 2676532 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || |||||| ||| || || || || || || | ||||||||||| || Sbjct 2676531 ACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 2676472 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||||||||| ||||| |||| Sbjct 2676471 TTCACAAAGATCTGCATCTCTGC 2676449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424856411125608