Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq9795 96.9 1e-15 seq8065 96.9 1e-15 seq659 84.2 8e-12 >seq9795 Length=220374 Score = 96.9 bits (106), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 5859 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACGCC 5918 ||| ||||||||||| || ||| | | |||||| |||||||| | ||||||||| || || Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484 Query 5919 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 5978 || |||||||| |||||| |||||| || |||||||||| ||||| | || Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427 Query 5979 ATTAAGGCCGTACTGGTTGGCGACGATCAGCA 6010 ||| | || || | ||| || || |||| || Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395 >seq8065 Length=27066 Score = 96.9 bits (106), Expect = 1e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 5859 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACGCC 5918 ||| |||| ||||||||| | || | || | |||||| |||||||||||||| || Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754 Query 5919 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 5978 || || || | || || || | ||||||||||| || || |||||||| |||||||| Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694 Query 5979 ATTAAGGCCGTACTGGTTGGCGACGATCAGCAA 6011 |||||| || ||| || ||||||| ||| Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661 >seq659 Length=6232 Score = 84.2 bits (92), Expect = 8e-12 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 5896 ATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAG 5955 ||||| ||||| |||||||| || || || || | ||| || || | |||||||||||| Sbjct 903 ATGCGTGACCAACCATCAACACCAACAACAGGTATGATTCCTTTATTTTTATCAGGGAAG 962 Query 5956 GCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAA 6011 ||||| || || || ||||| |||||||| || ||| || ||||||| ||| Sbjct 963 GCGTATATCTCCTTAGTCCAAGGATTAAGCTTATATTGGCCTGCAACGATCAACAA 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184411816543362