Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027991.1
Length=147303
Score E
Sequences producing significant alignments: (Bits) Value
seq10724 141 9e-29
seq10438 91.5 1e-13
>seq10724
Length=32813
Score = 141 bits (156), Expect = 9e-29
Identities = 177/240 (74%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATC-TCGATTACGT 58161
||||| || |||| | || |||| ||||| || ||| | | ||| |||| | ||
Sbjct 12407 GGCTGCAAGCCGGGCATCGTGCTCAATCCGGCCACCCCGGTG-GACATCCTCGACTGGGT 12465
Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221
||||| | |||||| || | ||||||||||| || ||||| ||||||||||||||| |
Sbjct 12466 ACTGGACGACCTGGATCTGGTGCTGCTGATGTCGGTCAACCCGGGCTTCGGCGGCCAGGC 12525
Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGG 58281
|| ||||| | ||||||| || ||||||| ||||| || ||||| |||
Sbjct 12526 CTTCATTCCCTCGGCGCTGGACAAGCTGCGCGTGGTGCGCAAGATGATCGATGCCAGCGG 12585
Query 58282 TTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCGC 58341
| ||||| |||||||| | |||||||||||||||| |||| ||||||||||||||
Sbjct 12586 CAAGGACATCCGCCTGGAGATCGACGGCGGCGTGAAGGCCGACAACATCGGCGAGATCGC 12645
>seq10438
Length=144381
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGTC 58162
||||||||| | || ||||||||||||| || ||||| | || | ||||||||
Sbjct 37565 GGCTGTAAATCCGGTTTGGTATTCAACCCAGCCACGCCATTACACTACTTAGATTACGTG 37506
Query 58163 ATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTCT 58222
||||| ||| |||| |||| || ||||||| || ||||| || || || || |||
Sbjct 37505 ATGGATAAAGTGGACATGATTTTGTTGATGTCTGTAAACCCTGGTTTTGGTGGTCAGAAA 37446
Query 58223 TTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGC 58275
|||||||| |||| || | || ||| ||| |||| || ||||||||
Sbjct 37445 TTTATTCCTGAGACATTGAACAAGCTGAAACAAGCGCGTGCACGTATTGATGC 37393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471152894659320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |