Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq10724 141 9e-29 seq10438 91.5 1e-13 >seq10724 Length=32813 Score = 141 bits (156), Expect = 9e-29 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATC-TCGATTACGT 58161 ||||| || |||| | || |||| ||||| || ||| | | ||| |||| | || Sbjct 12407 GGCTGCAAGCCGGGCATCGTGCTCAATCCGGCCACCCCGGTG-GACATCCTCGACTGGGT 12465 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||| | |||||| || | ||||||||||| || ||||| ||||||||||||||| | Sbjct 12466 ACTGGACGACCTGGATCTGGTGCTGCTGATGTCGGTCAACCCGGGCTTCGGCGGCCAGGC 12525 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGG 58281 || ||||| | ||||||| || ||||||| ||||| || ||||| ||| Sbjct 12526 CTTCATTCCCTCGGCGCTGGACAAGCTGCGCGTGGTGCGCAAGATGATCGATGCCAGCGG 12585 Query 58282 TTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCGC 58341 | ||||| |||||||| | |||||||||||||||| |||| |||||||||||||| Sbjct 12586 CAAGGACATCCGCCTGGAGATCGACGGCGGCGTGAAGGCCGACAACATCGGCGAGATCGC 12645 >seq10438 Length=144381 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGTC 58162 ||||||||| | || ||||||||||||| || ||||| | || | |||||||| Sbjct 37565 GGCTGTAAATCCGGTTTGGTATTCAACCCAGCCACGCCATTACACTACTTAGATTACGTG 37506 Query 58163 ATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTCT 58222 ||||| ||| |||| |||| || ||||||| || ||||| || || || || ||| Sbjct 37505 ATGGATAAAGTGGACATGATTTTGTTGATGTCTGTAAACCCTGGTTTTGGTGGTCAGAAA 37446 Query 58223 TTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGC 58275 |||||||| |||| || | || ||| ||| |||| || |||||||| Sbjct 37445 TTTATTCCTGAGACATTGAACAAGCTGAAACAAGCGCGTGCACGTATTGATGC 37393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471152894659320