Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_027995.1
Length=41666
Score E
Sequences producing significant alignments: (Bits) Value
seq9803 100 8e-17
>seq9803
Length=69196
Score = 100 bits (110), Expect = 8e-17
Identities = 185/270 (69%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 41190 GGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAAT 41249
|| || ||||| |||||| ||| | ||||||||||| | || | ||||| |||||
Sbjct 17486 GGTAATTTAGGGCGCGATCCGGAAGTGCGTTACATGCCCAATGGTGAGGCGGTGGCTAAC 17545
Query 41250 CTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAA 41309
| || || ||||| || || | |||||| || ||| |||||| || ||||| ||
Sbjct 17546 TTTAGTATTGCCACTACCGATAACTGGAAAGACAAA---TCCGGCGTTAAACAAGAAAAA 17602
Query 41310 ACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTG 41369
||||| |||||| ||||||| | | || || || ||||||||| | |||||| |
Sbjct 17603 ACGGAGTGGCACAATATTGTCATGTACCGTCGTCTTGCTGAAATTGCTGGTGAATACTTA 17662
Query 41370 CGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAG 41429
||||| | ||| | | ||||| | ||| ||| |||||||| ||| |
Sbjct 17663 AAAAAAGGCCGTCCGGTATATGTAGAAGGTCGTTTGCAAACACGTAAATG---GGAAAAA 17719
Query 41430 GCTGGCGTTGATCGCTACACCACTGAAATC 41459
| ||| || || |||||||| ||||||
Sbjct 17720 GATGGTGTAACCCGTTACACCACGGAAATC 17749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133185778710024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |