Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq9803 100 8e-17 >seq9803 Length=69196 Score = 100 bits (110), Expect = 8e-17 Identities = 185/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 41190 GGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAAT 41249 || || ||||| |||||| ||| | ||||||||||| | || | ||||| ||||| Sbjct 17486 GGTAATTTAGGGCGCGATCCGGAAGTGCGTTACATGCCCAATGGTGAGGCGGTGGCTAAC 17545 Query 41250 CTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAA 41309 | || || ||||| || || | |||||| || ||| |||||| || ||||| || Sbjct 17546 TTTAGTATTGCCACTACCGATAACTGGAAAGACAAA---TCCGGCGTTAAACAAGAAAAA 17602 Query 41310 ACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTG 41369 ||||| |||||| ||||||| | | || || || ||||||||| | |||||| | Sbjct 17603 ACGGAGTGGCACAATATTGTCATGTACCGTCGTCTTGCTGAAATTGCTGGTGAATACTTA 17662 Query 41370 CGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAG 41429 ||||| | ||| | | ||||| | ||| ||| |||||||| ||| | Sbjct 17663 AAAAAAGGCCGTCCGGTATATGTAGAAGGTCGTTTGCAAACACGTAAATG---GGAAAAA 17719 Query 41430 GCTGGCGTTGATCGCTACACCACTGAAATC 41459 | ||| || || |||||||| |||||| Sbjct 17720 GATGGTGTAACCCGTTACACCACGGAAATC 17749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133185778710024