Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8301 111 2e-19 seq9639 98.7 1e-15 >seq8301 Length=73398 Score = 111 bits (122), Expect = 2e-19 Identities = 357/541 (66%), Gaps = 16/541 (3%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCAC-ACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076 |||||||||||||||| ||| | |||| || ||| || || || || ||||| || Sbjct 66876 ATCTTCTCGCGACCGCCCACGTCCGGGTTCGG-CACCACGACCTGGCGGTCGAAGCGGCC 66818 Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136 || || || ||||| ||| || | || ||||| || || ||||| | | ||| Sbjct 66817 CGGACGCAGCAGGGCCGGGTCCAGAACGTCCGGACGGTTGGTGGCGGCGATCAGGATGAT 66758 Query 14137 GCCCGTCTCGTT---ATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 14193 ||| ||||| || ||||| |||||||| || || || || | ||| || || Sbjct 66757 GCC---TTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTC 66701 Query 14194 GCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATT 14251 ||| || ||||| || || ||| ||||| | || || ||||| ||||| ||| Sbjct 66700 GCGCTCGTCATT-GC-CGCCGCCCAGGCCCGCGCCACGATGGCGGCCGACCGCGTCGATT 66643 Query 14252 TCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACT 14311 || |||||||| | ||| || || || | ||| ||| || || || ||||| Sbjct 66642 TCGTCGATGAAGATGATGCAGGGGGCGTTATTCTTGGCCTGTTCGAACATGTCGCGCACG 66583 Query 14312 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 14370 | |||| ||||| || || |||||||| || |||| | ||| | || | || ||| Sbjct 66582 CGGCTGGCGCCGACGCCGACGAACATCTCGACGAAATCCGAACCGG-AGATCGTGAAGAA 66524 Query 14371 GGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTT 14430 || ||| | || || |||| ||| ||||||| |||||||| || || || || Sbjct 66523 CGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCGATCAGGGTCTTACCGGTGCCGGGAGG 66464 Query 14431 CCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-TCAGGTT 14489 || | || ||||| || |||||| || | || | | | | | | | | || | Sbjct 66463 GCCGACCAGCAGGGCGCCCTTGGGGATCTTGCCGCC-CAGACGCTGGAACTTGGCCGGGT 66405 Query 14490 GTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGT 14549 || |||||||| |||| || | || || ||||| || |||||| ||| | |||| Sbjct 66404 CCTTCAGGAAGTCGACGACCTCCTGCAGCTCTTCCTTGGCCTCGTCGACGCCGGCGACGT 66345 Query 14550 C 14550 | Sbjct 66344 C 66344 >seq9639 Length=103419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 346/536 (65%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077 |||| |||||| ||||| | | ||| || | ||| | || || || || || || Sbjct 60855 ATCTGCTCGCGGCCGCGGATATCGGGCAGCGTCACATACACCTGGCGGTCGAAACGGCCG 60796 Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137 ||||| || || || | || ||||| || ||||| ||||| || | ||| | | | Sbjct 60795 GGGCGCAGCAGCGCCGCATCCAGGATGTCGGGACGGTTGGTCGCAGCCACGACGATCACG 60736 Query 14138 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 14197 || | | | || ||||| |||||||| || | || || | ||| ||||| || Sbjct 60735 CCGAGGTTGGTCTCGAAGCCGTCCATCTCGACCAGCATCTGGTTCAGGGTCTGTTCACGC 60676 Query 14198 TCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255 ||||| || || | ||| || || | ||| || || |||||||| ||||||| Sbjct 60675 TCATCGTTGCCA--CCGCCCAGGCCTGCGCCGCGCTGGCGGCCCACGGCGTCGATTTCAT 60618 Query 14256 CGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCT 14315 ||||||| | ||| || ||| ||| | ||| || || || || ||||| | Sbjct 60617 CGATGAAGATGATGCAGGGTGCATTCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGGG 60558 Query 14316 TGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGA 14375 || || || || || ||||| ||||| || | || | | || || ||| |||| Sbjct 60557 CCGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAGCCCGAGATGCTGAAGAACGGGA 60498 Query 14376 CGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTG 14435 | || | |||||| ||||||| ||| || || ||||| || || || || || Sbjct 60497 CCTTGGCTTCACCAGCGATGGACTTGGCCAGCAGCGTCTTGCCGGTACCCGGAGGACCGA 60438 Query 14436 CGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-TCAGGTTGTTTA 14494 | || || |||||| || || | ||| | || | | | | | || | || Sbjct 60437 CCAGCAGCAGACCACGCGGAATAC-GGCCGCCGAGCTTCTGGAACTTGTTGGGGTCCTTC 60379 Query 14495 AGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTC 14550 ||||||||||||| ||| | | || ||||| || ||||| |||| ||||||| Sbjct 60378 AGGAAGTCCACGACTTCCTTGACCTCTTCCTTGGCTTCGTCGCAGCCTGCAACGTC 60323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618318787304040