Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq8301 111 2e-19
seq9639 98.7 1e-15
>seq8301
Length=73398
Score = 111 bits (122), Expect = 2e-19
Identities = 357/541 (66%), Gaps = 16/541 (3%)
Strand=Plus/Minus
Query 14018 ATCTTCTCGCGACCGCGCAC-ACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076
|||||||||||||||| ||| | |||| || ||| || || || || ||||| ||
Sbjct 66876 ATCTTCTCGCGACCGCCCACGTCCGGGTTCGG-CACCACGACCTGGCGGTCGAAGCGGCC 66818
Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136
|| || || ||||| ||| || | || ||||| || || ||||| | | |||
Sbjct 66817 CGGACGCAGCAGGGCCGGGTCCAGAACGTCCGGACGGTTGGTGGCGGCGATCAGGATGAT 66758
Query 14137 GCCCGTCTCGTT---ATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTC 14193
||| ||||| || ||||| |||||||| || || || || | ||| || ||
Sbjct 66757 GCC---TTCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTC 66701
Query 14194 GCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATT 14251
||| || ||||| || || ||| ||||| | || || ||||| ||||| |||
Sbjct 66700 GCGCTCGTCATT-GC-CGCCGCCCAGGCCCGCGCCACGATGGCGGCCGACCGCGTCGATT 66643
Query 14252 TCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACT 14311
|| |||||||| | ||| || || || | ||| ||| || || || |||||
Sbjct 66642 TCGTCGATGAAGATGATGCAGGGGGCGTTATTCTTGGCCTGTTCGAACATGTCGCGCACG 66583
Query 14312 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 14370
| |||| ||||| || || |||||||| || |||| | ||| | || | || |||
Sbjct 66582 CGGCTGGCGCCGACGCCGACGAACATCTCGACGAAATCCGAACCGG-AGATCGTGAAGAA 66524
Query 14371 GGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTT 14430
|| ||| | || || |||| ||| ||||||| |||||||| || || || ||
Sbjct 66523 CGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCGATCAGGGTCTTACCGGTGCCGGGAGG 66464
Query 14431 CCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-TCAGGTT 14489
|| | || ||||| || |||||| || | || | | | | | | | | || |
Sbjct 66463 GCCGACCAGCAGGGCGCCCTTGGGGATCTTGCCGCC-CAGACGCTGGAACTTGGCCGGGT 66405
Query 14490 GTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGT 14549
|| |||||||| |||| || | || || ||||| || |||||| ||| | ||||
Sbjct 66404 CCTTCAGGAAGTCGACGACCTCCTGCAGCTCTTCCTTGGCCTCGTCGACGCCGGCGACGT 66345
Query 14550 C 14550
|
Sbjct 66344 C 66344
>seq9639
Length=103419
Score = 98.7 bits (108), Expect = 1e-15
Identities = 346/536 (65%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 14018 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 14077
|||| |||||| ||||| | | ||| || | ||| | || || || || || ||
Sbjct 60855 ATCTGCTCGCGGCCGCGGATATCGGGCAGCGTCACATACACCTGGCGGTCGAAACGGCCG 60796
Query 14078 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 14137
||||| || || || | || ||||| || ||||| ||||| || | ||| | | |
Sbjct 60795 GGGCGCAGCAGCGCCGCATCCAGGATGTCGGGACGGTTGGTCGCAGCCACGACGATCACG 60736
Query 14138 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 14197
|| | | | || ||||| |||||||| || | || || | ||| ||||| ||
Sbjct 60735 CCGAGGTTGGTCTCGAAGCCGTCCATCTCGACCAGCATCTGGTTCAGGGTCTGTTCACGC 60676
Query 14198 TCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255
||||| || || | ||| || || | ||| || || |||||||| |||||||
Sbjct 60675 TCATCGTTGCCA--CCGCCCAGGCCTGCGCCGCGCTGGCGGCCCACGGCGTCGATTTCAT 60618
Query 14256 CGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCT 14315
||||||| | ||| || ||| ||| | ||| || || || || ||||| |
Sbjct 60617 CGATGAAGATGATGCAGGGTGCATTCTTCTTGGCGTTCTCGAACATGTCGCGCACGCGGG 60558
Query 14316 TGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGA 14375
|| || || || || ||||| ||||| || | || | | || || ||| ||||
Sbjct 60557 CCGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAGCCCGAGATGCTGAAGAACGGGA 60498
Query 14376 CGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTG 14435
| || | |||||| ||||||| ||| || || ||||| || || || || ||
Sbjct 60497 CCTTGGCTTCACCAGCGATGGACTTGGCCAGCAGCGTCTTGCCGGTACCCGGAGGACCGA 60438
Query 14436 CGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-TCAGGTTGTTTA 14494
| || || |||||| || || | ||| | || | | | | | || | ||
Sbjct 60437 CCAGCAGCAGACCACGCGGAATAC-GGCCGCCGAGCTTCTGGAACTTGTTGGGGTCCTTC 60379
Query 14495 AGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTC 14550
||||||||||||| ||| | | || ||||| || ||||| |||| |||||||
Sbjct 60378 AGGAAGTCCACGACTTCCTTGACCTCTTCCTTGGCTTCGTCGCAGCCTGCAACGTC 60323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618318787304040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |