Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq10097 86.0 7e-12
seq9751 84.2 3e-11
>seq10097
Length=214583
Score = 86.0 bits (94), Expect = 7e-12
Identities = 275/418 (66%), Gaps = 14/418 (3%)
Strand=Plus/Plus
Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576
|| || ||| || ||||| || ||||| || || ||| ||||| | |||| || ||
Sbjct 47680 GACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGGACGGTT 47739
Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633
|| ||||| |||| | || || ||||| || || || ||||| || ||
Sbjct 47740 GGTGGCGGCAATGAGGATGATGCCC---TCATTCGCCTCGAAGCCGTCCATTTCGACCAG 47796
Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGT 9691
|| ||||| | || ||||| ||||| || || ||| | | ||| || | ||
Sbjct 47797 CAGCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGAG--ACCGGCGCCACGA 47854
Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGC 9750
|| || |||||||| || || || ||||||| |||| | || ||| ||| | |
Sbjct 47855 TGGCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTTGGCC 47914
Query 9751 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9810
|| | || | || || ||||| | ||||| || || || ||||| ||||| || |
Sbjct 47915 TGCT-CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGAAATC 47973
Query 9811 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9869
| ||||| || | || |||||| || || | ||| || || | || || || || |
Sbjct 47974 CGAACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCCAGCA 48032
Query 9870 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
| ||||||||||| || || || |||| || |||| || ||||| || ||||
Sbjct 48033 GCGTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAATTTTACCGCC 48090
>seq9751
Length=51986
Score = 84.2 bits (92), Expect = 3e-11
Identities = 247/376 (66%), Gaps = 20/376 (5%)
Strand=Plus/Minus
Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582
||| ||||| || || || || | | || | ||| | || |||| | || || || ||
Sbjct 9312 ACGGTCAAAACGGCCGGGGCGTAACAAAGCTTTATCCAAGACATCAGCACGGTTGGTTGC 9253
Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642
|| || |||| | ||| | | ||||| || |||||||| ||| | ||||||
Sbjct 9252 AGCAATCACAATCACACCGGAATTGGCCTCAAAGCCGTCCATCTCCACCAACATTTGGTT 9193
Query 9643 AATAGTTTGTTCCCGTTCATCATT-----CGCTGGCATACCACCAGCACTGCGTTGCTTT 9697
|| ||||| || || || || || | | || |||| || ||| || |
Sbjct 9192 AAGGGTTTGCTCACGCTCGTCGTTACCACCACCGG--TACCTGCACCACGGCTACGG--- 9138
Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGAC 9753
|| || ||||||||||| ||||| |||| ||||| | ||| |||| ||||
Sbjct 9137 CCTACCGCATCAATCTCGTCAATAAAGATAATGCAAGGGGAGTTCTTTTT----AGCGGT 9082
Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
|||||| | || || ||||| || || ||||| |||||||| || || |||| |
Sbjct 9081 TTCAAACATGTCACGCACACGTGCCGCACCTACACCGACAAACATTTCAACGAAGTCAGA 9022
Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
||||| || | | ||| || || || | |||||| |||||||| || || | | |
Sbjct 9021 ACCGGAA-ATCGTAAAGAACGGCACTTTGGCTTCACCGGCAATGGCACGTGCTAACAAGG 8963
Query 9873 TCTTACCCGTACCTGG 9888
| ||||| || || ||
Sbjct 8962 TTTTACCTGTCCCCGG 8947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583151008445160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |