Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10097 86.0 7e-12 seq9751 84.2 3e-11 >seq10097 Length=214583 Score = 86.0 bits (94), Expect = 7e-12 Identities = 275/418 (66%), Gaps = 14/418 (3%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||| || ||||| || ||||| || || ||| ||||| | |||| || || Sbjct 47680 GACCTGACGGTCGAAGCGGCCGGGACGCAGAAGTGCGGGGTCAAGAACATCAGGACGGTT 47739 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 || ||||| |||| | || || ||||| || || || ||||| || || Sbjct 47740 GGTGGCGGCAATGAGGATGATGCCC---TCATTCGCCTCGAAGCCGTCCATTTCGACCAG 47796 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGT 9691 || ||||| | || ||||| ||||| || || ||| | | ||| || | || Sbjct 47797 CAGCTGGTTCAGCGTCTGTTCACGTTCGTCGTTACCGCCGCCGAG--ACCGGCGCCACGA 47854 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGC 9750 || || |||||||| || || || ||||||| |||| | || ||| ||| | | Sbjct 47855 TGGCGGCCGACGGCATCGATTTCGTCGATGAAGATGATGGAGGGCGCATTCTTCTTGGCC 47914 Query 9751 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9810 || | || | || || ||||| | ||||| || || || ||||| ||||| || | Sbjct 47915 TGCT-CGAACATGTCACGCACACGGCTTGCGCCGACGCCGACGAACATTTCCACGAAATC 47973 Query 9811 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9869 | ||||| || | || |||||| || || | ||| || || | || || || || | Sbjct 47974 CGAACCGGAA-ATGGTGAAGAAGGGCACGTTGGCTTCGCCAGCGACGGAACGCGCCAGCA 48032 Query 9870 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | ||||||||||| || || || |||| || |||| || ||||| || |||| Sbjct 48033 GCGTCTTACCCGTGCCCGGAGGGCCAACGAGCAGCACACCACGCGGAATTTTACCGCC 48090 >seq9751 Length=51986 Score = 84.2 bits (92), Expect = 3e-11 Identities = 247/376 (66%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| || || || || | | || | ||| | || |||| | || || || || Sbjct 9312 ACGGTCAAAACGGCCGGGGCGTAACAAAGCTTTATCCAAGACATCAGCACGGTTGGTTGC 9253 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || || |||| | ||| | | ||||| || |||||||| ||| | |||||| Sbjct 9252 AGCAATCACAATCACACCGGAATTGGCCTCAAAGCCGTCCATCTCCACCAACATTTGGTT 9193 Query 9643 AATAGTTTGTTCCCGTTCATCATT-----CGCTGGCATACCACCAGCACTGCGTTGCTTT 9697 || ||||| || || || || || | | || |||| || ||| || | Sbjct 9192 AAGGGTTTGCTCACGCTCGTCGTTACCACCACCGG--TACCTGCACCACGGCTACGG--- 9138 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGAC 9753 || || ||||||||||| ||||| |||| ||||| | ||| |||| |||| Sbjct 9137 CCTACCGCATCAATCTCGTCAATAAAGATAATGCAAGGGGAGTTCTTTTT----AGCGGT 9082 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||||| | || || ||||| || || ||||| |||||||| || || |||| | Sbjct 9081 TTCAAACATGTCACGCACACGTGCCGCACCTACACCGACAAACATTTCAACGAAGTCAGA 9022 Query 9814 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 ||||| || | | ||| || || || | |||||| |||||||| || || | | | Sbjct 9021 ACCGGAA-ATCGTAAAGAACGGCACTTTGGCTTCACCGGCAATGGCACGTGCTAACAAGG 8963 Query 9873 TCTTACCCGTACCTGG 9888 | ||||| || || || Sbjct 8962 TTTTACCTGTCCCCGG 8947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583151008445160