Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9945 116 4e-21 seq10237 96.9 4e-15 seq8995 91.5 2e-13 >seq9945 Length=90163 Score = 116 bits (128), Expect = 4e-21 Identities = 200/287 (70%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 79438 TCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCC 79497 ||||| ||| |||| ||||||||||| || ||| ||||| |||||| | |||| Sbjct 42268 TCGTCACCCGTGTTCTTGCGCAGCTCGAGGAATTCCTCAATGTCCAGGTGCCAGGTCTCC 42327 Query 79498 AGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTG 79557 || || || || | ||||||||||||||| |||||||| ||| | ||||||| Sbjct 42328 AGGTACGTGCAGACGGCGCCCTTGCGCTTGCCG---CCCTGGTTCACGGCCACGGCCGTG 42384 Query 79558 TTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGA--CGCCGTTCGTCCCGTTGA 79615 | ||||| || ||| | |||||| | ||| | |||| |||||||||| || |||| Sbjct 42385 TCGTTGACCACCTTGAGGAAGGGCACCACGCC--CTGCGACTCGCCGTTCGTGCCCTTGA 42442 Query 79616 TTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGG 79675 | || | ||| || || | | || |||| | | || | ||| |||| |||||| Sbjct 42443 TGCGCGAACCCAGGGCGCGCACGCGCGTCCAGTCGTTGCCCAGGCCGCCGGCGAACTTGG 42502 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC--GATCG 79720 | | | ||| ||||||| || ||| |||||||| || ||||| Sbjct 42503 ACAGCAGGGCGTTTTCCTTGATCGACTCATAGATGCCGTCCAGATCG 42549 >seq10237 Length=30126 Score = 96.9 bits (106), Expect = 4e-15 Identities = 244/363 (67%), Gaps = 10/363 (3%) Strand=Plus/Minus Query 166101 TCGGTACTGGACCGGCCGGGACCGGTAAGACGCTCCTGGC---ATGCAACGCCGGTTCTC 166157 |||| | || |||||||| ||||| ||||| ||||||| | || ||| | || Sbjct 24865 TCGGCATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTAGCCAGCGCGG--TCGA 24808 Query 166158 ACGCACTGG-CGACGCGCAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGTGAGCGTC 166216 | || ||| ||| ||| ||| | || |||||| || ||| ||||| ||| | | Sbjct 24807 A-GCCCTGAACGAATCGCG-GGTGCAGCGCCTGATCTTGGTGCGCCCGGCGGTGGAGGCC 24750 Query 166217 GAGGAGCAGCACGGGTTCCTTCCCGGCAGTCTCGAGC-AGAAGATGGAGCCGTGGACTCG 166275 | ||| ||| || ||||| |||||| || |||| ||||| | || || | || Sbjct 24749 GGCGAGAAGCTGGGCTTCCTGCCCGGCGACCT-GAGCCAGAAGGTCGATCCCTACCTGCG 24691 Query 166276 ACCCATGTTCGACGCCCTGTACCGGTACATGAGCCCTAAGAAGGTTCGGGATCTCATGGA 166335 ||| ||| ||||||||||||| | ||| || | ||||| | || |||| Sbjct 24690 ACCGCTGTACGACGCCCTGTACGAGATGATGGGCGTGGAAAAGGTGGTCAAGCTGCTGGA 24631 Query 166336 AAATCACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGC 166395 || |||||||||||||| || ||||| ||||||||||| || ||| || || | || Sbjct 24630 GAAGAACGTCATCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTCAACGATGC 24571 Query 166396 CTGGATTATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGAC 166455 | | ||| ||| || |||||| | || | |||||||||||| | ||||| Sbjct 24570 GTTCGTGATCCTGGACGAAGCACAGAACACCACCATCGAGCAGATGAAGATGTTCCTGAC 24511 Query 166456 CCG 166458 ||| Sbjct 24510 CCG 24508 >seq8995 Length=8301158 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||| ||| |||||| |||||| || || || | || ||||| |||||| ||| Sbjct 6969042 TCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCG 6968983 Query 59951 GTGGA-TGAGTCCT--GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006 |||| || | | | ||| ||| || | ||||| | |||| ||||| ||| |||| Sbjct 6968982 CTGGACTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGC-TGCAGTGG 6968924 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 |||| |||||||| || || || || || | |||| ||||||||||| || || || || Sbjct 6968923 AAGGCATCTTCTTTTCCGGTTCTTT-TGCGTCTATATTCTGGCTCAAGAAACGAGGACTG 6968865 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||| ||||| | || ||||| || || ||| | | || ||||| Sbjct 6968864 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGG 6968818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||| ||| |||||| |||||| || || || | || ||||| |||||| ||| Sbjct 6971910 TCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCG 6971851 Query 59951 GTGGA-TGAGTCCT--GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006 |||| || | | | ||| ||| || | ||||| | |||| ||||| ||| |||| Sbjct 6971850 CTGGACTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGC-TGCAGTGG 6971792 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 |||| |||||||| || || || || || | |||| ||||||||||| || || || || Sbjct 6971791 AAGGCATCTTCTTTTCCGGTTCTTT-TGCGTCTATATTCTGGCTCAAGAAACGAGGACTG 6971733 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||| ||||| | || ||||| || || ||| | | || ||||| Sbjct 6971732 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGG 6971686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548421547062960