Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq9945 116 4e-21
seq10237 96.9 4e-15
seq8995 91.5 2e-13
>seq9945
Length=90163
Score = 116 bits (128), Expect = 4e-21
Identities = 200/287 (70%), Gaps = 9/287 (3%)
Strand=Plus/Plus
Query 79438 TCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCC 79497
||||| ||| |||| ||||||||||| || ||| ||||| |||||| | ||||
Sbjct 42268 TCGTCACCCGTGTTCTTGCGCAGCTCGAGGAATTCCTCAATGTCCAGGTGCCAGGTCTCC 42327
Query 79498 AGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTG 79557
|| || || || | ||||||||||||||| |||||||| ||| | |||||||
Sbjct 42328 AGGTACGTGCAGACGGCGCCCTTGCGCTTGCCG---CCCTGGTTCACGGCCACGGCCGTG 42384
Query 79558 TTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGA--CGCCGTTCGTCCCGTTGA 79615
| ||||| || ||| | |||||| | ||| | |||| |||||||||| || ||||
Sbjct 42385 TCGTTGACCACCTTGAGGAAGGGCACCACGCC--CTGCGACTCGCCGTTCGTGCCCTTGA 42442
Query 79616 TTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGG 79675
| || | ||| || || | | || |||| | | || | ||| |||| ||||||
Sbjct 42443 TGCGCGAACCCAGGGCGCGCACGCGCGTCCAGTCGTTGCCCAGGCCGCCGGCGAACTTGG 42502
Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC--GATCG 79720
| | | ||| ||||||| || ||| |||||||| || |||||
Sbjct 42503 ACAGCAGGGCGTTTTCCTTGATCGACTCATAGATGCCGTCCAGATCG 42549
>seq10237
Length=30126
Score = 96.9 bits (106), Expect = 4e-15
Identities = 244/363 (67%), Gaps = 10/363 (3%)
Strand=Plus/Minus
Query 166101 TCGGTACTGGACCGGCCGGGACCGGTAAGACGCTCCTGGC---ATGCAACGCCGGTTCTC 166157
|||| | || |||||||| ||||| ||||| ||||||| | || ||| | ||
Sbjct 24865 TCGGCATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTAGCCAGCGCGG--TCGA 24808
Query 166158 ACGCACTGG-CGACGCGCAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGTGAGCGTC 166216
| || ||| ||| ||| ||| | || |||||| || ||| ||||| ||| | |
Sbjct 24807 A-GCCCTGAACGAATCGCG-GGTGCAGCGCCTGATCTTGGTGCGCCCGGCGGTGGAGGCC 24750
Query 166217 GAGGAGCAGCACGGGTTCCTTCCCGGCAGTCTCGAGC-AGAAGATGGAGCCGTGGACTCG 166275
| ||| ||| || ||||| |||||| || |||| ||||| | || || | ||
Sbjct 24749 GGCGAGAAGCTGGGCTTCCTGCCCGGCGACCT-GAGCCAGAAGGTCGATCCCTACCTGCG 24691
Query 166276 ACCCATGTTCGACGCCCTGTACCGGTACATGAGCCCTAAGAAGGTTCGGGATCTCATGGA 166335
||| ||| ||||||||||||| | ||| || | ||||| | || ||||
Sbjct 24690 ACCGCTGTACGACGCCCTGTACGAGATGATGGGCGTGGAAAAGGTGGTCAAGCTGCTGGA 24631
Query 166336 AAATCACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGC 166395
|| |||||||||||||| || ||||| ||||||||||| || ||| || || | ||
Sbjct 24630 GAAGAACGTCATCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTCAACGATGC 24571
Query 166396 CTGGATTATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGAC 166455
| | ||| ||| || |||||| | || | |||||||||||| | |||||
Sbjct 24570 GTTCGTGATCCTGGACGAAGCACAGAACACCACCATCGAGCAGATGAAGATGTTCCTGAC 24511
Query 166456 CCG 166458
|||
Sbjct 24510 CCG 24508
>seq8995
Length=8301158
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/227 (71%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950
||| ||| |||||| |||||| || || || | || ||||| |||||| |||
Sbjct 6969042 TCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCG 6968983
Query 59951 GTGGA-TGAGTCCT--GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006
|||| || | | | ||| ||| || | ||||| | |||| ||||| ||| ||||
Sbjct 6968982 CTGGACTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGC-TGCAGTGG 6968924
Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065
|||| |||||||| || || || || || | |||| ||||||||||| || || || ||
Sbjct 6968923 AAGGCATCTTCTTTTCCGGTTCTTT-TGCGTCTATATTCTGGCTCAAGAAACGAGGACTG 6968865
Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112
||||| ||||| | || ||||| || || ||| | | || |||||
Sbjct 6968864 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGG 6968818
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/227 (71%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950
||| ||| |||||| |||||| || || || | || ||||| |||||| |||
Sbjct 6971910 TCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCG 6971851
Query 59951 GTGGA-TGAGTCCT--GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006
|||| || | | | ||| ||| || | ||||| | |||| ||||| ||| ||||
Sbjct 6971850 CTGGACTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGC-TGCAGTGG 6971792
Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065
|||| |||||||| || || || || || | |||| ||||||||||| || || || ||
Sbjct 6971791 AAGGCATCTTCTTTTCCGGTTCTTT-TGCGTCTATATTCTGGCTCAAGAAACGAGGACTG 6971733
Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112
||||| ||||| | || ||||| || || ||| | | || |||||
Sbjct 6971732 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGG 6971686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548421547062960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |