Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq9576 147 2e-30
seq2172 116 4e-21
seq9945 98.7 1e-15
seq6889 98.7 1e-15
seq12984 95.1 1e-14
seq8995 93.3 5e-14
seq7661 89.7 6e-13
>seq9576
Length=119252
Score = 147 bits (162), Expect = 2e-30
Identities = 248/354 (70%), Gaps = 15/354 (4%)
Strand=Plus/Plus
Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609
|||||||| ||| ||||||||||| | ||| ||||| ||||| ||||||||||||||
Sbjct 84238 CTGCTGCAGCATCAGCCACATGGCCTCGACATAGTCGCGCGCGTGACCCCAGTCGCGCTT 84297
Query 124610 GGCATCCAGGTTTCCGAGCTCGATTGGCTT------GGCCGTCTTGTTCCACTCCGCCAA 124663
||| ||||| || || ||||||| | ||| | || |||| | |||| |
Sbjct 84298 GGCGTCCAGATTGCCCAGCTCGACGGTCTTCTGCTGGCCCAGCTTGATGG---CCGC--A 84352
Query 124664 ACCCAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTG 124721
||| || || | |||||| ||||| |||||| ||||| || | |||||||||
Sbjct 84353 ACCGCGTCGGTGACCTTGCGGGTCACGAACTCGATGCCGCGCAGCGGACTTTCGTGGTTG 84412
Query 124722 AACAGAATGCCAGTAC-ACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780
||||| ||||| | || | || || || | |||||| ||||| |||||||||
Sbjct 84413 AACAGGATGCC-GCACGAGGCGTGCAGGCCAAAGCTCTCGCGATAGTTCACCGTCATCCA 84471
Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATT 124840
| |||| ||||||||| ||| ||||||| || |||||||| |||||| | ||
Sbjct 84472 GTGCCCATAGAGCTTGGCCACCGCATAGGGCGAGCGCGGGTAGAACGGGGTGGTCTCCGA 84531
Query 124841 TTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894
||| | || ||||| | | || |||||||||| | ||||| |||||
Sbjct 84532 CTGGATCGGATGCTGCACCAGGCCGTACATCTCCGACGACGAGGCCTGGTAGAA 84585
Score = 113 bits (124), Expect = 5e-20
Identities = 205/295 (69%), Gaps = 15/295 (5%)
Strand=Plus/Plus
Query 158962 GTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATG 159021
|||| || || || | |||| |||| || || ||| || ||||| |||||||||
Sbjct 84200 GTCTTGCCGGTAGCGACCACATAGTCGTCCGGCGTCTCCTGCTGCAGCATCAGCCACATG 84259
Query 159022 GCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCG 159081
|||||||| || || ||||||||||||||||||||||||| |||| || || ||||||
Sbjct 84260 GCCTCGACATAGTCGCGCGCGTGACCCCAGTCGCGCTTGGCGTCCAGATTGCCCAGCTCG 84319
Query 159082 A-TGACTTTT------CCAGACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGCGT 159134
| | ||| | |||| ||| | | || || || |||| |||||| ||
Sbjct 84320 ACGGTCTTCTGCTGGCCCAG-CTTGATGGCCGCAACC---GCGTCGGTGACCTTGCGGGT 84375
Query 159135 CACAAACTCTGCTCCGCGCCGTTCCGAC--TCATGGTTAAACAGAATGCCGGTACAAGCG 159192
||| ||||| |||||| | | ||| || ||||| ||||| |||||| | |||
Sbjct 84376 CACGAACTCGATGCCGCGCAG--CGGACTTTCGTGGTTGAACAGGATGCCGCACGAGGCG 84433
Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG 159247
|||| | || |||||| || || || ||||||| ||| |||||||||
Sbjct 84434 TGCAGGCCAAAGCTCTCGCGATAGTTCACCGTCATCCAGTGCCCATAGAGCTTGG 84488
>seq2172
Length=1301
Score = 116 bits (128), Expect = 4e-21
Identities = 247/361 (68%), Gaps = 17/361 (5%)
Strand=Plus/Plus
Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540
||||| ||||| |||||||| | ||| ||| || ||| | ||||| | || ||
Sbjct 458 CGCCAGCTCGACGAACTCACGAACCGAATGCTGCTCGCCGGTGGCGATCACATAGTCCTC 517
Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCT-TGGACGTAGTCCTCTGCGTGCCCCC 124599
||| |||||||| ||| |||||| || | | ||| ||||| ||||| ||||
Sbjct 518 GGGGGCGTCCTGCTGCAGCATCAGCCAC-TGCATCTCGACATAGTCGCGGGCGTGGCCCC 576
Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGA--TTGGCTTG---GCCGT-CTTGTTCC 124653
||||||| ||||| ||||| ||||| | || ||| | || |||| |||| | |
Sbjct 577 AGTCGCGGCGGGCATTGAGGTTGCCGAGATAGAGCTTGTCCTGCAGGCCGAGCTTGATGC 636
Query 124654 ACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAG 124710
| |||| || | || |||||||||||||| || |||| ||||| | |
Sbjct 637 GC---GCCAGCGCCCGCGTGATCTTGCGCGTCACGAAGGTCTCG---CCGCGCACCGGGG 690
Query 124711 ACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTT 124770
| |||||||||||||| ||||| | || ||| | || ||||| | ||| || |||||
Sbjct 691 ATTCGTGGTTGAACAGGATGCCGTTGCAGGCATAGATGCCGTAGGCCTCACGATAGTTCA 750
Query 124771 TCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830
||| ||||| || | ||||||||| || ||||||| || || ||||| || |
Sbjct 751 CCGTGATCCAGTAGGCGTAGAGCTTGGCGACCGCATAGGGCGAGCGCGGATAGAACGGCG 810
Query 124831 T 124831
|
Sbjct 811 T 811
>seq9945
Length=90163
Score = 98.7 bits (108), Expect = 1e-15
Identities = 242/362 (67%), Gaps = 10/362 (3%)
Strand=Plus/Minus
Query 53284 CACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGT 53343
|||||| || ||||||||| || ||| | | | ||| |||| |||| ||||
Sbjct 42621 CACGCCCACGCTGTTCAACAGCGGCACGCTGCGCTCGCAGCTGTCTTCGTGCTACCTGAC 42562
Query 53344 GGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACAT 53403
|| || || || || | ||||||||||| ||| || ||||||| |||| |
Sbjct 42561 CACGGTGCCCGACGA-TC--TGGACGGCATCTATGAGTCGATCAAGGAAAACGCCCTGCT 42505
Query 53404 CTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACC 53463
||||||| | || || | || | | |||| || ||| || || || | |
Sbjct 42504 GTCCAAGTTCGCCGGCGGCCTGGGCAACGACTGGACGCGCGTGCGCGCCCTGGGTTCGCG 42445
Query 53464 AATCAAGGGGACGAACGGCG--TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAAC 53521
|||||||| |||||||||| |||| | || | ||||| | ||| || |||||
Sbjct 42444 CATCAAGGGCACGAACGGCGAGTCGCAG--GGCGTGGTGCCCTTCCTCAAGGTGGTCAAC 42387
Query 53522 AACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTAC 53581
|||||||| | ||| |||||||| || ||||||||||| | || || |||
Sbjct 42386 GACACGGCCGTGGCCGTGAACCAGGGCGGC---AAGCGCAAGGGCGCCGTCTGCACGTAC 42330
Query 53582 CTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGAC 53641
|| ||| | |||||| |||||| ||| || ||||||||||| ||| |||||||
Sbjct 42329 CTGGAGACCTGGCACCTGGACATTGAGGAATTCCTCGAGCTGCGCAAGAACACGGGTGAC 42270
Query 53642 GA 53643
||
Sbjct 42269 GA 42268
>seq6889
Length=11136585
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/126 (79%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363
||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || ||
Sbjct 8460206 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAA-CCTGGTACCAAACTG 8460264
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| ||||
Sbjct 8460265 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 8460324
Query 117424 AATCGT 117429
||| ||
Sbjct 8460325 AATGGT 8460330
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | ||||||||||| || || || ||||||||
Sbjct 8460206 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 8460265
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | |
Sbjct 8460266 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 8460325
Query 152149 ATCGT 152153
|| ||
Sbjct 8460326 ATGGT 8460330
>seq12984
Length=7207180
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||| || ||| || || || || ||
Sbjct 1727908 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCGTGAAGTCGAGTCCCAAACTGA 1727849
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| |||
Sbjct 1727848 CCGATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 1727789
Query 117425 ATCGT 117429
|| ||
Sbjct 1727788 ATAGT 1727784
>seq8995
Length=8301158
Score = 93.3 bits (102), Expect = 5e-14
Identities = 106/140 (76%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822
||| | || ||||||||||| || | |||||| ||||||| ||||||||||| |||||
Sbjct 6968812 TGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCT 6968871
Query 74823 CGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881
|| ||||| | ||| || || | | || || ||||| |||||||||||||| ||
Sbjct 6968872 CGTTTCTTGAGCCAGAATATAGACGCA-AAAGAACCGGAAAAGAAGATGCCTTCCACTGC 6968930
Query 74882 CGCAAAGGCGACAAGGCGTT 74901
|||||||| || | ||||
Sbjct 6968931 AGCAAAGGCTACCACACGTT 6968950
Score = 93.3 bits (102), Expect = 5e-14
Identities = 106/140 (76%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822
||| | || ||||||||||| || | |||||| ||||||| ||||||||||| |||||
Sbjct 6971680 TGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCT 6971739
Query 74823 CGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881
|| ||||| | ||| || || | | || || ||||| |||||||||||||| ||
Sbjct 6971740 CGTTTCTTGAGCCAGAATATAGACGCA-AAAGAACCGGAAAAGAAGATGCCTTCCACTGC 6971798
Query 74882 CGCAAAGGCGACAAGGCGTT 74901
|||||||| || | ||||
Sbjct 6971799 AGCAAAGGCTACCACACGTT 6971818
>seq7661
Length=1898141
Score = 89.7 bits (98), Expect = 6e-13
Identities = 100/131 (76%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||||| ||||||||||| ||||| || |||||
Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538
Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890
| ||| || || | | || ||| |||| |||||||||||||| || ||||||||
Sbjct 818537 AGCCAGAATATAGACGCAAAAG-AACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 818479
Query 74891 GACAAGGCGTT 74901
|| | ||||
Sbjct 818478 TACCACACGTT 818468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547112993428200
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