Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9576 147 2e-30 seq2172 116 4e-21 seq9945 98.7 1e-15 seq6889 98.7 1e-15 seq12984 95.1 1e-14 seq8995 93.3 5e-14 seq7661 89.7 6e-13 >seq9576 Length=119252 Score = 147 bits (162), Expect = 2e-30 Identities = 248/354 (70%), Gaps = 15/354 (4%) Strand=Plus/Plus Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609 |||||||| ||| ||||||||||| | ||| ||||| ||||| |||||||||||||| Sbjct 84238 CTGCTGCAGCATCAGCCACATGGCCTCGACATAGTCGCGCGCGTGACCCCAGTCGCGCTT 84297 Query 124610 GGCATCCAGGTTTCCGAGCTCGATTGGCTT------GGCCGTCTTGTTCCACTCCGCCAA 124663 ||| ||||| || || ||||||| | ||| | || |||| | |||| | Sbjct 84298 GGCGTCCAGATTGCCCAGCTCGACGGTCTTCTGCTGGCCCAGCTTGATGG---CCGC--A 84352 Query 124664 ACCCAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTG 124721 ||| || || | |||||| ||||| |||||| ||||| || | ||||||||| Sbjct 84353 ACCGCGTCGGTGACCTTGCGGGTCACGAACTCGATGCCGCGCAGCGGACTTTCGTGGTTG 84412 Query 124722 AACAGAATGCCAGTAC-ACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 ||||| ||||| | || | || || || | |||||| ||||| ||||||||| Sbjct 84413 AACAGGATGCC-GCACGAGGCGTGCAGGCCAAAGCTCTCGCGATAGTTCACCGTCATCCA 84471 Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATT 124840 | |||| ||||||||| ||| ||||||| || |||||||| |||||| | || Sbjct 84472 GTGCCCATAGAGCTTGGCCACCGCATAGGGCGAGCGCGGGTAGAACGGGGTGGTCTCCGA 84531 Query 124841 TTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 ||| | || ||||| | | || |||||||||| | ||||| ||||| Sbjct 84532 CTGGATCGGATGCTGCACCAGGCCGTACATCTCCGACGACGAGGCCTGGTAGAA 84585 Score = 113 bits (124), Expect = 5e-20 Identities = 205/295 (69%), Gaps = 15/295 (5%) Strand=Plus/Plus Query 158962 GTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATG 159021 |||| || || || | |||| |||| || || ||| || ||||| ||||||||| Sbjct 84200 GTCTTGCCGGTAGCGACCACATAGTCGTCCGGCGTCTCCTGCTGCAGCATCAGCCACATG 84259 Query 159022 GCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCG 159081 |||||||| || || ||||||||||||||||||||||||| |||| || || |||||| Sbjct 84260 GCCTCGACATAGTCGCGCGCGTGACCCCAGTCGCGCTTGGCGTCCAGATTGCCCAGCTCG 84319 Query 159082 A-TGACTTTT------CCAGACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGCGT 159134 | | ||| | |||| ||| | | || || || |||| |||||| || Sbjct 84320 ACGGTCTTCTGCTGGCCCAG-CTTGATGGCCGCAACC---GCGTCGGTGACCTTGCGGGT 84375 Query 159135 CACAAACTCTGCTCCGCGCCGTTCCGAC--TCATGGTTAAACAGAATGCCGGTACAAGCG 159192 ||| ||||| |||||| | | ||| || ||||| ||||| |||||| | ||| Sbjct 84376 CACGAACTCGATGCCGCGCAG--CGGACTTTCGTGGTTGAACAGGATGCCGCACGAGGCG 84433 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG 159247 |||| | || |||||| || || || ||||||| ||| ||||||||| Sbjct 84434 TGCAGGCCAAAGCTCTCGCGATAGTTCACCGTCATCCAGTGCCCATAGAGCTTGG 84488 >seq2172 Length=1301 Score = 116 bits (128), Expect = 4e-21 Identities = 247/361 (68%), Gaps = 17/361 (5%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||||| ||||| |||||||| | ||| ||| || ||| | ||||| | || || Sbjct 458 CGCCAGCTCGACGAACTCACGAACCGAATGCTGCTCGCCGGTGGCGATCACATAGTCCTC 517 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCT-TGGACGTAGTCCTCTGCGTGCCCCC 124599 ||| |||||||| ||| |||||| || | | ||| ||||| ||||| |||| Sbjct 518 GGGGGCGTCCTGCTGCAGCATCAGCCAC-TGCATCTCGACATAGTCGCGGGCGTGGCCCC 576 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGA--TTGGCTTG---GCCGT-CTTGTTCC 124653 ||||||| ||||| ||||| ||||| | || ||| | || |||| |||| | | Sbjct 577 AGTCGCGGCGGGCATTGAGGTTGCCGAGATAGAGCTTGTCCTGCAGGCCGAGCTTGATGC 636 Query 124654 ACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAG 124710 | |||| || | || |||||||||||||| || |||| ||||| | | Sbjct 637 GC---GCCAGCGCCCGCGTGATCTTGCGCGTCACGAAGGTCTCG---CCGCGCACCGGGG 690 Query 124711 ACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTT 124770 | |||||||||||||| ||||| | || ||| | || ||||| | ||| || ||||| Sbjct 691 ATTCGTGGTTGAACAGGATGCCGTTGCAGGCATAGATGCCGTAGGCCTCACGATAGTTCA 750 Query 124771 TCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 ||| ||||| || | ||||||||| || ||||||| || || ||||| || | Sbjct 751 CCGTGATCCAGTAGGCGTAGAGCTTGGCGACCGCATAGGGCGAGCGCGGATAGAACGGCG 810 Query 124831 T 124831 | Sbjct 811 T 811 >seq9945 Length=90163 Score = 98.7 bits (108), Expect = 1e-15 Identities = 242/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 53284 CACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGT 53343 |||||| || ||||||||| || ||| | | | ||| |||| |||| |||| Sbjct 42621 CACGCCCACGCTGTTCAACAGCGGCACGCTGCGCTCGCAGCTGTCTTCGTGCTACCTGAC 42562 Query 53344 GGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACAT 53403 || || || || || | ||||||||||| ||| || ||||||| |||| | Sbjct 42561 CACGGTGCCCGACGA-TC--TGGACGGCATCTATGAGTCGATCAAGGAAAACGCCCTGCT 42505 Query 53404 CTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACC 53463 ||||||| | || || | || | | |||| || ||| || || || | | Sbjct 42504 GTCCAAGTTCGCCGGCGGCCTGGGCAACGACTGGACGCGCGTGCGCGCCCTGGGTTCGCG 42445 Query 53464 AATCAAGGGGACGAACGGCG--TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAAC 53521 |||||||| |||||||||| |||| | || | ||||| | ||| || ||||| Sbjct 42444 CATCAAGGGCACGAACGGCGAGTCGCAG--GGCGTGGTGCCCTTCCTCAAGGTGGTCAAC 42387 Query 53522 AACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTAC 53581 |||||||| | ||| |||||||| || ||||||||||| | || || ||| Sbjct 42386 GACACGGCCGTGGCCGTGAACCAGGGCGGC---AAGCGCAAGGGCGCCGTCTGCACGTAC 42330 Query 53582 CTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGAC 53641 || ||| | |||||| |||||| ||| || ||||||||||| ||| ||||||| Sbjct 42329 CTGGAGACCTGGCACCTGGACATTGAGGAATTCCTCGAGCTGCGCAAGAACACGGGTGAC 42270 Query 53642 GA 53643 || Sbjct 42269 GA 42268 >seq6889 Length=11136585 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || || Sbjct 8460206 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAA-CCTGGTACCAAACTG 8460264 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| Sbjct 8460265 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 8460324 Query 117424 AATCGT 117429 ||| || Sbjct 8460325 AATGGT 8460330 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||||||||||| || || || |||||||| Sbjct 8460206 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 8460265 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | | Sbjct 8460266 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 8460325 Query 152149 ATCGT 152153 || || Sbjct 8460326 ATGGT 8460330 >seq12984 Length=7207180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||| || ||| || || || || || Sbjct 1727908 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCGTGAAGTCGAGTCCCAAACTGA 1727849 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| | ||||||| ||||||||||| ||||||||||| ||| Sbjct 1727848 CCGATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 1727789 Query 117425 ATCGT 117429 || || Sbjct 1727788 ATAGT 1727784 >seq8995 Length=8301158 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | || ||||||||||| || | |||||| ||||||| ||||||||||| ||||| Sbjct 6968812 TGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCT 6968871 Query 74823 CGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 || ||||| | ||| || || | | || || ||||| |||||||||||||| || Sbjct 6968872 CGTTTCTTGAGCCAGAATATAGACGCA-AAAGAACCGGAAAAGAAGATGCCTTCCACTGC 6968930 Query 74882 CGCAAAGGCGACAAGGCGTT 74901 |||||||| || | |||| Sbjct 6968931 AGCAAAGGCTACCACACGTT 6968950 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | || ||||||||||| || | |||||| ||||||| ||||||||||| ||||| Sbjct 6971680 TGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCT 6971739 Query 74823 CGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 || ||||| | ||| || || | | || || ||||| |||||||||||||| || Sbjct 6971740 CGTTTCTTGAGCCAGAATATAGACGCA-AAAGAACCGGAAAAGAAGATGCCTTCCACTGC 6971798 Query 74882 CGCAAAGGCGACAAGGCGTT 74901 |||||||| || | |||| Sbjct 6971799 AGCAAAGGCTACCACACGTT 6971818 >seq7661 Length=1898141 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || ||| |||| |||||||||||||| || |||||||| Sbjct 818537 AGCCAGAATATAGACGCAAAAG-AACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 818479 Query 74891 GACAAGGCGTT 74901 || | |||| Sbjct 818478 TACCACACGTT 818468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547112993428200