Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq889 89.7 7e-13 >seq889 Length=2431656 Score = 89.7 bits (98), Expect = 7e-13 Identities = 193/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATG-TA 14326 ||| || | ||||| || ||||||||||| ||||| |||||||| | ||| | || | Sbjct 2150988 TGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACACTTCAGCG--TGCTC 2150931 Query 14327 CG-GGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 || ||| ||| || | ||| ||| |||||| ||| ||| |||||| |||| Sbjct 2150930 CGTGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCA 2150871 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 | |||| | ||||||||||| | ||||||| ||| ||| | ||||| | || Sbjct 2150870 TCGCCAGGCTGGTCAAGTGGCAGGGCCACGAGGGAGATGTCAGCATGGGGGCACCTTATG 2150811 Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGT 14505 | || ||| || ||||| | ||||||||||| | ||| |||| ||| || | | Sbjct 2150810 CACCCTGCTCTGGAATCCATCAGCGGGCCATCTGCATTTATGGGGCCGGGGACCTGCACT 2150751 Query 14506 GG---CTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || || ||| || ||||| || || |||||||| ||| Sbjct 2150750 GGATTCTCCAGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 2150710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658615200579840