Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq9470 127 2e-24 seq9538 105 5e-18 seq9639 98.7 8e-16 seq10734 93.3 3e-14 seq10366 91.5 1e-13 seq646 89.7 4e-13 seq4090 87.8 1e-12 >seq9470 Length=127963 Score = 127 bits (140), Expect = 2e-24 Identities = 210/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 29837 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGG 29896 || || ||||| |||||| | |||||| |||| | | || || | | ||| Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635 Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 |||| ||| ||||| |||||| |||| || ||||| || || | || |||||| | || Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 ||| |||| || || || | |||| ||||||||| || || || ||||| || | Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30076 || |||| | |||||| ||| | || || || | |||||| |||| | ||||| || Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30136 | | ||||||||| || || |||||| | | | ||| ||||||||||| | ||| Sbjct 52816 AGGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACG 52875 Query 30137 ATG 30139 ||| Sbjct 52876 ATG 52878 >seq9538 Length=646221 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 |||| ||| ||||| ||||| |||| || || || || |||| ||||| || || || Sbjct 487069 TAGATGTGCGCGTCACCCAGCGTGTGCACGAAATCGCCGGGTTTCAGCCCCGTCACCTGC 487010 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 |||| ||| ||||| || | ||| |||||||| || || || ||||| ||| Sbjct 487009 GCCACCATCATGGTGAGCAGCGCATAGGAAGCGATGTTGAACGGCACGCCGAGAAAGATG 486950 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30076 ||| | || | |||||||||||| || || ||| |||||| ||||| ||||| || Sbjct 486949 TCCGCGGAACGCTGGTAGAGCTGGCATGACAGCCGTCCGTCCGAAACGTAGAACTGGAAC 486890 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCAT 30102 | | |||||| || || || ||||| Sbjct 486889 AGGCAGTGGCAGGGCGGCAGCGCCAT 486864 >seq9639 Length=103419 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || |||| ||||| || || || | ||||||||||||||| ||||| || || || Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 |||||| | | |||||| ||||| || ||||| |||||| |||||| ||||| Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 | | ||||||||| || || ||||| | || ||| ||||||||||| Sbjct 3903 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 3962 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 30167 ||||||||||| | | || |||||| || ||| Sbjct 3963 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 3996 >seq10734 Length=9239 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 ||| || || ||||| |||| || || || ||| | || |||||| | || |||| Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 ||||| || || || | ||||||||||||||| || || || ||||| ||||| || Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 30081 | |||||| ||||| || ||||| ||||| |||||| ||||| ||| | Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664 Query 30082 GTGGCACGG 30090 ||||||||| Sbjct 1663 GTGGCACGG 1655 >seq10366 Length=3198051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || ||||| || | || Sbjct 2452268 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATC 2452209 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | |||| ||||||| ||||| ||||||| ||| |||||||| || Sbjct 2452208 CCCTTCAGCTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 2452149 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| || || || ||||| ||| || || || | ||| ||||| || Sbjct 2452148 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2452101 >seq646 Length=687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 |||| ||| ||||| || ||| | || || ||||| || || | || || ||||| || Sbjct 203 TAGAGGTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGC 262 Query 29957 GC---CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || ||||||| || || || | ||| |||||||| ||||| || ||||| | Sbjct 263 GCGACCATCATG---GTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAAC 319 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 | ||| |||| | |||||||||||| || || ||| || | | ||||| |||||| Sbjct 320 ACATCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGA 379 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||| | ||| || || || || ||||| Sbjct 380 AACAGGCAGTGACAGGGCGGCAGCGCCAT 408 >seq4090 Length=8080645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 3526707 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3526766 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 3526767 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406235829217428