Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq9470 127 2e-24
seq9538 105 5e-18
seq9639 98.7 8e-16
seq10734 93.3 3e-14
seq10366 91.5 1e-13
seq646 89.7 4e-13
seq4090 87.8 1e-12
>seq9470
Length=127963
Score = 127 bits (140), Expect = 2e-24
Identities = 210/303 (69%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 29837 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGG 29896
|| || ||||| |||||| | |||||| |||| | | || || | | |||
Sbjct 52576 GTCGGGAAGGGCAGGGGCTCGCGGGAGAGCTGCAGCTTCGCCTGCTCGACATGGTTCAGA 52635
Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956
|||| ||| ||||| |||||| |||| || ||||| || || | || |||||| | ||
Sbjct 52636 TAGAGGTGGGCGTCGCCCAGGGTGTGCACGAACTCGCCGGGCTGCAGGCCGGTGGCCTGG 52695
Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016
||| |||| || || || | |||| ||||||||| || || || ||||| || |
Sbjct 52696 GCCGTCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGG 52755
Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30076
|| |||| | |||||| ||| | || || || | |||||| |||| | ||||| ||
Sbjct 52756 TCGGCCGAGCGCTGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAAC 52815
Query 30077 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30136
| | ||||||||| || || |||||| | | | ||| ||||||||||| | |||
Sbjct 52816 AGGCAGTGGCACGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACG 52875
Query 30137 ATG 30139
|||
Sbjct 52876 ATG 52878
>seq9538
Length=646221
Score = 105 bits (116), Expect = 5e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956
|||| ||| ||||| ||||| |||| || || || || |||| ||||| || || ||
Sbjct 487069 TAGATGTGCGCGTCACCCAGCGTGTGCACGAAATCGCCGGGTTTCAGCCCCGTCACCTGC 487010
Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016
|||| ||| ||||| || | ||| |||||||| || || || ||||| |||
Sbjct 487009 GCCACCATCATGGTGAGCAGCGCATAGGAAGCGATGTTGAACGGCACGCCGAGAAAGATG 486950
Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30076
||| | || | |||||||||||| || || ||| |||||| ||||| ||||| ||
Sbjct 486949 TCCGCGGAACGCTGGTAGAGCTGGCATGACAGCCGTCCGTCCGAAACGTAGAACTGGAAC 486890
Query 30077 ATGGCGTGGCACGGAGGAAGAGCCAT 30102
| | |||||| || || || |||||
Sbjct 486889 AGGCAGTGGCAGGGCGGCAGCGCCAT 486864
>seq9639
Length=103419
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013
|| |||| ||||| || || || | ||||||||||||||| ||||| || || ||
Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842
Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073
|||||| | | |||||| ||||| || ||||| |||||| |||||| |||||
Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902
Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133
| | ||||||||| || || ||||| | || ||| |||||||||||
Sbjct 3903 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 3962
Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 30167
||||||||||| | | || |||||| || |||
Sbjct 3963 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 3996
>seq10734
Length=9239
Score = 93.3 bits (102), Expect = 3e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961
||| || || ||||| |||| || || || ||| | || |||||| | || ||||
Sbjct 1843 GTGCGCATCGCCCAGCGTGTGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 1784
Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021
||||| || || || | ||||||||||||||| || || || ||||| ||||| ||
Sbjct 1783 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACTCCGAGGAAGATGTCGCC 1724
Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 30081
| |||||| ||||| || ||||| ||||| |||||| ||||| ||| |
Sbjct 1723 GCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 1664
Query 30082 GTGGCACGG 30090
|||||||||
Sbjct 1663 GTGGCACGG 1655
>seq10366
Length=3198051
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || ||||||||||||||||| || || ||||| || | ||
Sbjct 2452268 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCTAAATC 2452209
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| || | |||| ||||||| ||||| ||||||| ||| |||||||| ||
Sbjct 2452208 CCCTTCAGCTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 2452149
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||| || || || ||||| ||| || || || | ||| ||||| ||
Sbjct 2452148 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2452101
>seq646
Length=687
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956
|||| ||| ||||| || ||| | || || ||||| || || | || || ||||| ||
Sbjct 203 TAGAGGTGCGCGTCACCGAGGGTATGCACGAACTCGCCGGGCTTCAGGCCAGTGACCTGC 262
Query 29957 GC---CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013
|| ||||||| || || || | ||| |||||||| ||||| || ||||| |
Sbjct 263 GCGACCATCATG---GTCAGCAGGGCATAGGACGCGATGTTGAAGGGCACGCCGAGGAAC 319
Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073
| ||| |||| | |||||||||||| || || ||| || | | ||||| ||||||
Sbjct 320 ACATCCGCCGAGCGCTGGTAGAGCTGGCAGGACAGCCGGCCCTTGGCGACGTAGAACTGA 379
Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCAT 30102
||| | ||| || || || || |||||
Sbjct 380 AACAGGCAGTGACAGGGCGGCAGCGCCAT 408
>seq4090
Length=8080645
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 3526707 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3526766
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 3526767 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406235829217428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |