Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6889 118 9e-22 seq899 107 2e-18 seq504 82.4 7e-11 >seq6889 Length=11136585 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||||||||||| | || || || || ||||| || Sbjct 1034463 ATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1034404 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 1034403 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1034344 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 1034343 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1034284 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| || ||||||| || Sbjct 1034283 ATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGGTAT 1034234 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || || Sbjct 1034235 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 1034176 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 1034175 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1034116 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 1034115 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATTGCCGCACTCTTTCTGATTACAAC 1034056 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| | ||| || ||||||| || Sbjct 1034055 ATCCAGAAAGAGTCGACCCTGCACCTGGTAGTCCGTCTGAGGGGTGGTAT 1034006 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || | || || Sbjct 1034007 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGGCCATCACCCTGGAGGAAGAGCCCAGT 1033948 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | |||| || || || || || || || |||||||| || || || || Sbjct 1033947 GACACCACCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1033888 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 1033887 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1033828 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||||||| | || |||| | ||| | |||||||| Sbjct 1033827 ATTCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTTAGGGGTGGC 1033780 >seq899 Length=2520420 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | |||||||| || ||||| || Sbjct 2265540 ATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATTACTCTGGAGGTGGAGCCAAGT 2265481 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||| ||||||||||| || || || ||| Sbjct 2265480 GACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAA 2265421 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 2265420 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2265361 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 2265360 ATCCAGAAAGAGTCCAC 2265344 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 2264628 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2264569 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 2264568 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 2264509 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 2264508 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2264449 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| || | || ||||| |||| ||| |||| || Sbjct 2264448 ATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 2264402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 2264856 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2264797 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 2264796 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 2264737 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 2264736 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2264677 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 2264676 ATCCAGAAAGAGTCCAC 2264660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 2265084 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2265025 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 2265024 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 2264965 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 2264964 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2264905 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 2264904 ATCCAGAAAGAGTCCAC 2264888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || | || ||||| || Sbjct 2265312 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 2265253 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 2265252 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 2265193 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 2265192 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 2265133 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 2265132 ATCCAGAAAGAGTCCAC 2265116 >seq504 Length=1076656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || |||||||| || || || || Sbjct 268278 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCCTCG 268337 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | || | || || | || || || || || ||||| || || || || || Sbjct 268338 GATACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 268397 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | | || | || || |||||| Sbjct 268398 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 268457 Query 27168 ATTCAAAAGGAGT 27180 ||||||||||||| Sbjct 268458 ATTCAAAAGGAGT 268470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434836532047680