Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028657.1
Length=60919
Score E
Sequences producing significant alignments: (Bits) Value
seq14302 161 4e-35
seq7029 113 2e-20
seq12839 93.3 2e-14
seq11405 89.7 2e-13
seq10981 89.7 2e-13
seq9795 89.7 2e-13
>seq14302
Length=439
Score = 161 bits (178), Expect = 4e-35
Identities = 137/169 (81%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 46399 GTTCGCGTCGATCAGGTGGGCATGCTCAGGGTTATGGATGCTGCCGGTGTCAGCAAGGAT 46458
||| |||||| | ||||||| |||||| ||||||||||||||||||| || || |||||
Sbjct 169 GTTGGCGTCGTTGAGGTGGGTATGCTCTTGGTTATGGATGCTGCCGGTCTCTGCGAGGAT 110
Query 46459 CTCGCGCTGAACCCAATCCCACACGCCGATAGCTGGGCGCAGGATAAGCCACAGTGATTC 46518
||||| ||| |||||||||||||| ||| | || |||| || | |||||||| ||||
Sbjct 109 CTCGCTCTGGACCCAATCCCACACACCGGTGGCAGGGCATAGTGTGAGCCACAGAGATTG 50
Query 46519 GAGCATCTCGGCCGGCGGCATTGGTCTACTCATGGATCGCCTGTATCTT 46567
||||| || || || ||||||||||||||||| | || |||| | |||
Sbjct 49 GAGCAAGTCAGCTGGAGGCATTGGTCTACTCATCGGTCACCTGCAGCTT 1
>seq7029
Length=148368
Score = 113 bits (124), Expect = 2e-20
Identities = 125/164 (76%), Gaps = 2/164 (1%)
Strand=Plus/Minus
Query 53678 TCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGC 53737
||||||||||| | |||||||| ||||||||| || ||||| |||||||| || ||||||
Sbjct 76724 TCATCGCGGTAGATGAACATGATGATGTCGGCATCCTGCTCGATGGCGCCCGATTCGCGC 76665
Query 53738 AGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTCGCACC-CTCGGTTTAGCTGGCA 53796
|||||| | | || |||||||||| ||| ||| |||| ||||| |||||| |
Sbjct 76664 AGGTCGGACATCATGGGGCGCTTGTCGGTGCGCTGCTC-CACCGAACGGTTGAGCTGGGA 76606
Query 53797 GAGGGGAAGCACAGGACACCCAATCTCCCTTGCCAACAGCTTCA 53840
|||| || ||| || ||| | |||| | |||| || |||||
Sbjct 76605 CAGGGCAATCACCGGGCACTGCAACTCCTTGGCCAGCATCTTCA 76562
>seq12839
Length=204338
Score = 93.3 bits (102), Expect = 2e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 54040 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTTGCGGCGCTGGAACCTAAATCCAGT 53982
Score = 93.3 bits (102), Expect = 2e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 54276 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTTGCGGCGCTGGAACCTAAATCCAGT 54218
>seq11405
Length=110570
Score = 89.7 bits (98), Expect = 2e-13
Identities = 169/249 (68%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 36657 GTGACCATGCGGATTTGCTGGTCGAGCCGATCACGGCCTCCATCGGTCAGCCACTGGTGC 36716
|| |||| | ||| |||| ||| ||| | | |||| || ||||||||||||||||
Sbjct 107638 GTCACCAGGTCGATCTGCTTGTCCAGCAGGCCCTGGCCACCGCTGGTCAGCCACTGGTGC 107579
Query 36717 ATCCTTTCGCTTTCACCGCGGCGAGCCTTTAGCTCGGCATGCACCTCCTTCGGCAGGATG 36776
||| | || || ||||| || ||||| | |||||||||||| || ||| || | |
Sbjct 107578 ATCTTCACGGAATCGCCGCGCCGCGCCTTCAACTCGGCATGCACATCAGGCGGGAGCAGG 107519
Query 36777 GCGGCGTAAATCCAGCGGTCGGTGATCTGGCCATAGATAGCCGGCGTTCCCTTGGCATGA 36836
| |||| | ||| |||||||||||| || ||| || ||||| || | ||
Sbjct 107518 CAGCCGTACACCCATTTGTCGGTGATCTGCCCGTAGCAGGCAGGCGTGCCGCCGCTGTGC 107459
Query 36837 CCTTCGAAAACGGTGCCGGTGATCCTGGCCAGAGCACGGTAGTAGTCATCGCCGAAGCGC 36896
|| | | ||||| || | | ||||| ||| ||||||| ||| |||||||
Sbjct 107458 CCGCTGTACCGGGTGCACGTCAGGCGCGCCAGCGCATGGTAGTACTCAGGCGTGAAGCGC 107399
Query 36897 TTCTCCCAT 36905
|||||||
Sbjct 107398 ACCTCCCAT 107390
Score = 82.4 bits (90), Expect = 3e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 18486 TCAACGAGTCTGGGCTGTACTCGGCGATCCTGCGCAGCCGCAAGGCTGAGGCCAAGCGCT 18545
|||||||||||||| ||||| | |||| | | ||| ||||||||||||||||||||
Sbjct 108844 TCAACGAGTCTGGGATGTACGCCCTGATCTTCGGAAGCACCAAGGCTGAGGCCAAGCGCT 108785
Query 18546 TCAAGAAGTGGGTAACCGCCGAGGTACTTCCTGCGATTCG 18585
||||| ||||| ||| |||||| || || |||| ||
Sbjct 108784 TCAAGCGCTGGGTGACCAGCGAGGTTCTGCCATCGATCCG 108745
>seq10981
Length=80740
Score = 89.7 bits (98), Expect = 2e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017
||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 57843 TGGTGCGAAAGGAGAGACTCGAACTCTCACGCCTCGCGGCGCTGGAACCTAAATCCAGT 57901
>seq9795
Length=220374
Score = 89.7 bits (98), Expect = 2e-13
Identities = 119/165 (72%), Gaps = 3/165 (2%)
Strand=Plus/Plus
Query 6042 GCAGATGGTCGCCCTGCTGATCGTGGCAGACCAGTACAAACTGAACCCCTTCACCAAGGA 6101
||| ||| ||| ||| |||| || ||| || | || | | || ||||| || ||
Sbjct 198381 GCAAATGTCCGCTCTGATGATTGTTGCAAACGAATATGGATTAAATCCCTTTGTTAAAGA 198440
Query 6102 GTTGTACGCATTCCCCGACAAGAACAACGGCATCGTGCCGGTTGTTGGTGTGGATGGCTG 6161
| | ||||| | || || ||| | ||||| || |||||||||||||| ||||||||
Sbjct 198441 GATTTACGCCTATCCAGATAAGGGC---GGCATTGTTCCGGTTGTTGGTGTAGATGGCTG 198497
Query 6162 GGCTCGGATCATCAACGAGAACCCACAGTTCGATGGCATGGAATT 6206
| | || ||||| ||||| | || || |||||||||||||| ||
Sbjct 198498 GACACGCATCATGAACGAACATCCGCAATTCGATGGCATGGAGTT 198542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194784361334798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |