Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq14302 161 4e-35 seq7029 113 2e-20 seq12839 93.3 2e-14 seq11405 89.7 2e-13 seq10981 89.7 2e-13 seq9795 89.7 2e-13 >seq14302 Length=439 Score = 161 bits (178), Expect = 4e-35 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 46399 GTTCGCGTCGATCAGGTGGGCATGCTCAGGGTTATGGATGCTGCCGGTGTCAGCAAGGAT 46458 ||| |||||| | ||||||| |||||| ||||||||||||||||||| || || ||||| Sbjct 169 GTTGGCGTCGTTGAGGTGGGTATGCTCTTGGTTATGGATGCTGCCGGTCTCTGCGAGGAT 110 Query 46459 CTCGCGCTGAACCCAATCCCACACGCCGATAGCTGGGCGCAGGATAAGCCACAGTGATTC 46518 ||||| ||| |||||||||||||| ||| | || |||| || | |||||||| |||| Sbjct 109 CTCGCTCTGGACCCAATCCCACACACCGGTGGCAGGGCATAGTGTGAGCCACAGAGATTG 50 Query 46519 GAGCATCTCGGCCGGCGGCATTGGTCTACTCATGGATCGCCTGTATCTT 46567 ||||| || || || ||||||||||||||||| | || |||| | ||| Sbjct 49 GAGCAAGTCAGCTGGAGGCATTGGTCTACTCATCGGTCACCTGCAGCTT 1 >seq7029 Length=148368 Score = 113 bits (124), Expect = 2e-20 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 53678 TCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGC 53737 ||||||||||| | |||||||| ||||||||| || ||||| |||||||| || |||||| Sbjct 76724 TCATCGCGGTAGATGAACATGATGATGTCGGCATCCTGCTCGATGGCGCCCGATTCGCGC 76665 Query 53738 AGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTCGCACC-CTCGGTTTAGCTGGCA 53796 |||||| | | || |||||||||| ||| ||| |||| ||||| |||||| | Sbjct 76664 AGGTCGGACATCATGGGGCGCTTGTCGGTGCGCTGCTC-CACCGAACGGTTGAGCTGGGA 76606 Query 53797 GAGGGGAAGCACAGGACACCCAATCTCCCTTGCCAACAGCTTCA 53840 |||| || ||| || ||| | |||| | |||| || ||||| Sbjct 76605 CAGGGCAATCACCGGGCACTGCAACTCCTTGGCCAGCATCTTCA 76562 >seq12839 Length=204338 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 54040 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTTGCGGCGCTGGAACCTAAATCCAGT 53982 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 54276 TGGTGGGGACGGAGAGACTCGAACTCTCACACCTTGCGGCGCTGGAACCTAAATCCAGT 54218 >seq11405 Length=110570 Score = 89.7 bits (98), Expect = 2e-13 Identities = 169/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 36657 GTGACCATGCGGATTTGCTGGTCGAGCCGATCACGGCCTCCATCGGTCAGCCACTGGTGC 36716 || |||| | ||| |||| ||| ||| | | |||| || |||||||||||||||| Sbjct 107638 GTCACCAGGTCGATCTGCTTGTCCAGCAGGCCCTGGCCACCGCTGGTCAGCCACTGGTGC 107579 Query 36717 ATCCTTTCGCTTTCACCGCGGCGAGCCTTTAGCTCGGCATGCACCTCCTTCGGCAGGATG 36776 ||| | || || ||||| || ||||| | |||||||||||| || ||| || | | Sbjct 107578 ATCTTCACGGAATCGCCGCGCCGCGCCTTCAACTCGGCATGCACATCAGGCGGGAGCAGG 107519 Query 36777 GCGGCGTAAATCCAGCGGTCGGTGATCTGGCCATAGATAGCCGGCGTTCCCTTGGCATGA 36836 | |||| | ||| |||||||||||| || ||| || ||||| || | || Sbjct 107518 CAGCCGTACACCCATTTGTCGGTGATCTGCCCGTAGCAGGCAGGCGTGCCGCCGCTGTGC 107459 Query 36837 CCTTCGAAAACGGTGCCGGTGATCCTGGCCAGAGCACGGTAGTAGTCATCGCCGAAGCGC 36896 || | | ||||| || | | ||||| ||| ||||||| ||| ||||||| Sbjct 107458 CCGCTGTACCGGGTGCACGTCAGGCGCGCCAGCGCATGGTAGTACTCAGGCGTGAAGCGC 107399 Query 36897 TTCTCCCAT 36905 ||||||| Sbjct 107398 ACCTCCCAT 107390 Score = 82.4 bits (90), Expect = 3e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 18486 TCAACGAGTCTGGGCTGTACTCGGCGATCCTGCGCAGCCGCAAGGCTGAGGCCAAGCGCT 18545 |||||||||||||| ||||| | |||| | | ||| |||||||||||||||||||| Sbjct 108844 TCAACGAGTCTGGGATGTACGCCCTGATCTTCGGAAGCACCAAGGCTGAGGCCAAGCGCT 108785 Query 18546 TCAAGAAGTGGGTAACCGCCGAGGTACTTCCTGCGATTCG 18585 ||||| ||||| ||| |||||| || || |||| || Sbjct 108784 TCAAGCGCTGGGTGACCAGCGAGGTTCTGCCATCGATCCG 108745 >seq10981 Length=80740 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCCTGT 15017 ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 57843 TGGTGCGAAAGGAGAGACTCGAACTCTCACGCCTCGCGGCGCTGGAACCTAAATCCAGT 57901 >seq9795 Length=220374 Score = 89.7 bits (98), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 6042 GCAGATGGTCGCCCTGCTGATCGTGGCAGACCAGTACAAACTGAACCCCTTCACCAAGGA 6101 ||| ||| ||| ||| |||| || ||| || | || | | || ||||| || || Sbjct 198381 GCAAATGTCCGCTCTGATGATTGTTGCAAACGAATATGGATTAAATCCCTTTGTTAAAGA 198440 Query 6102 GTTGTACGCATTCCCCGACAAGAACAACGGCATCGTGCCGGTTGTTGGTGTGGATGGCTG 6161 | | ||||| | || || ||| | ||||| || |||||||||||||| |||||||| Sbjct 198441 GATTTACGCCTATCCAGATAAGGGC---GGCATTGTTCCGGTTGTTGGTGTAGATGGCTG 198497 Query 6162 GGCTCGGATCATCAACGAGAACCCACAGTTCGATGGCATGGAATT 6206 | | || ||||| ||||| | || || |||||||||||||| || Sbjct 198498 GACACGCATCATGAACGAACATCCGCAATTCGATGGCATGGAGTT 198542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194784361334798