Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq8237 120 3e-22 >seq8237 Length=506431 Score = 120 bits (132), Expect = 3e-22 Identities = 209/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 101358 ATGAAAGTATATCTGGTAGGTGGCGCTGTTCGTGATGGTCTGCTGGGTCGTCCAGTTCAT 101417 ||| |||| ||| | ||||| || || ||| | ||| | | || |||| ||| ||| Sbjct 173869 ATGCAAGTTTATTTAGTAGGCGGTGCCGTTAGAGATCATTTACTCGGTCATCCCTATCAC 173928 Query 101418 GACCGTGATTACGTGGTTGTGGGTGCAACACACGAAGAGATGATTGAAAAAGGTT-TCAC 101476 || ||||| || ||||| || || || | || | | ||| |||||| ||| Sbjct 173929 GAAAAGGATTATGTTGTTGTTGGCGCTACGCCAGAGCAACTTCTTGCCCAAGGTTATCAA 173988 Query 101477 CCAGGTTGGCGCTGCTTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACT 101536 || | |||| | |||||| |||| || ||||| |||| ||||||||||| || || Sbjct 173989 CCCG-TTGGGAAAGATTTCCCTGTGTTTTTACATCCCAAAACAAAAGAAGAATATGCCCT 174047 Query 101537 GGCCCGTACTGAGCGTAAAACTGGTGAAGGCCATACTGGCTTTGAGACCTTCTTCAGC-- 101594 |||||||||||||||||| | || | || || ||| |||||| || || | | Sbjct 174048 AGCCCGTACTGAGCGTAAATCAGGACACGGTTATCATGGATTTGAG---TTTTTTACCGA 174104 Query 101595 -CCGGATGTAACTCTGGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGC 101653 || ||||| || | |||||||||||| ||||||||| | || |||||||| || || Sbjct 174105 TCCAGATGTCACCTTAGAAGAGGATTTAATTCGTCGTGACTTAACCATCAATGCCATTGC 174164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457344294445080