Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq10858 93.3 4e-14 seq10415 87.8 2e-12 >seq10858 Length=55950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 197/286 (69%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 16724 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 16782 || || ||||| ||||||| ||| || ||||||| ||||| || | || ||||| || Sbjct 29950 GCCATGGCATTGATGGTCAGGTCGCGCCGGGCCAGATCCTGCTCCAGCGTGACATCGGGC 29891 Query 16783 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAG 16842 || | | ||| ||||| | |||| || ||| | ||||||||||| ||||| Sbjct 29890 GCCGC-CTGCACGACGAAACCCCGGTACCCCAGGCCGCTCTTGCGCTCGGTACGCGCCAG 29832 Query 16843 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAA-TGCGGCACCGACTTGCT 16901 ||||| || || | ||||| ||||| ||| | || ||||| | | || || || || Sbjct 29831 CGCGTATTCCTCGTGCGTCTCGGGATGGAGGAAGACCGGGAAGTCCCGC-CCCACAGGCA 29773 Query 16902 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTT 16961 |||||| | || ||| | |||| | |||| ||||||||| | |||| ||||| Sbjct 29772 GAAAGCCGCGCGCGGACATTTGTTCGGGCGTGGCGCCGACCACCCCCCAGTCGCGGTC-A 29714 Query 16962 TGCTC-TCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCA 17006 ||| | | |||| || ||||| ||||||||||| |||| Sbjct 29713 TGCACGGCCCGCCCCAAAAGACGGTCGCGCACCGCGCCGCCCACCA 29668 >seq10415 Length=20837 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 52356 CGGTGTATAGCGCAGTCTGGTAGCGCGAATGCTTTGGGAGCATTAGGTCGTTGGTTCGAG 52415 ||| ||||||||||||||||||||||| ||||||||||||| | |||| ||||||| Sbjct 5231 CGGGGTATAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCGAA 5290 Query 52416 TCCAACTACACCGACCAA 52433 ||| |||| |||||||| Sbjct 5291 TCCCTCTACCCCGACCAA 5308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478924231526880