Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028672.1
Length=149732
Score E
Sequences producing significant alignments: (Bits) Value
seq10858 93.3 4e-14
seq10415 87.8 2e-12
>seq10858
Length=55950
Score = 93.3 bits (102), Expect = 4e-14
Identities = 197/286 (69%), Gaps = 6/286 (2%)
Strand=Plus/Minus
Query 16724 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 16782
|| || ||||| ||||||| ||| || ||||||| ||||| || | || ||||| ||
Sbjct 29950 GCCATGGCATTGATGGTCAGGTCGCGCCGGGCCAGATCCTGCTCCAGCGTGACATCGGGC 29891
Query 16783 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAG 16842
|| | | ||| ||||| | |||| || ||| | ||||||||||| |||||
Sbjct 29890 GCCGC-CTGCACGACGAAACCCCGGTACCCCAGGCCGCTCTTGCGCTCGGTACGCGCCAG 29832
Query 16843 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAA-TGCGGCACCGACTTGCT 16901
||||| || || | ||||| ||||| ||| | || ||||| | | || || || ||
Sbjct 29831 CGCGTATTCCTCGTGCGTCTCGGGATGGAGGAAGACCGGGAAGTCCCGC-CCCACAGGCA 29773
Query 16902 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTT 16961
|||||| | || ||| | |||| | |||| ||||||||| | |||| |||||
Sbjct 29772 GAAAGCCGCGCGCGGACATTTGTTCGGGCGTGGCGCCGACCACCCCCCAGTCGCGGTC-A 29714
Query 16962 TGCTC-TCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCA 17006
||| | | |||| || ||||| ||||||||||| ||||
Sbjct 29713 TGCACGGCCCGCCCCAAAAGACGGTCGCGCACCGCGCCGCCCACCA 29668
>seq10415
Length=20837
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 52356 CGGTGTATAGCGCAGTCTGGTAGCGCGAATGCTTTGGGAGCATTAGGTCGTTGGTTCGAG 52415
||| ||||||||||||||||||||||| ||||||||||||| | |||| |||||||
Sbjct 5231 CGGGGTATAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCGAA 5290
Query 52416 TCCAACTACACCGACCAA 52433
||| |||| ||||||||
Sbjct 5291 TCCCTCTACCCCGACCAA 5308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478924231526880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |