Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028675.1 Length=41526 Score E Sequences producing significant alignments: (Bits) Value seq11926 134 4e-27 >seq11926 Length=3012 Score = 134 bits (148), Expect = 4e-27 Identities = 185/253 (73%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 36983 TAATACAACCGTAGATGCTAATGGATTTATTAAAGCTGCGTCACCCATCGTAAAACTATT 37042 ||||||||| ||||| | || || ||| |||||||||| || || || || || |||| Sbjct 2816 TAATACAACAATAGATTCAAACGGTTTTGTTAAAGCTGCATCTCCAATTGTTCAATTATT 2757 Query 37043 TGCAGATAAGATTGAACTCAATGATGAAGCTGCTGAGCAAAATATCATTTTTGAAAAGTT 37102 ||| ||||||||| | ||||||||||| ||||||||| ||||||||||| | Sbjct 2756 TGCTGATAAGATTTCAGCGAATGATGAAGCAATAGAGCAAAATCCTATTTTTGAAAAAGT 2697 Query 37103 GGGAGTTGGTGACTATTTAATTAAAAATAGCGCT-GGTTTCTCTAATGATGGTTGGTACA 37161 || ||||| | || | |||||||||| | || || || |||| || ||||||| | Sbjct 2696 GGATATTGGTCATTACCTGATTAAAAATA-CACTAGGCTTTGCTAAAGAAGGTTGGTGGA 2638 Query 37162 TTGAAGCACCAAAAGACGCAAATGGTAACAATC-TATT--TGCATTAGTATATAAAACTC 37218 |||||| ||||| || | ||||| ||||| |||| |||| | | |||| | || Sbjct 2637 TTGAAGTACCAACTGATACCAATGG---CAATCGTATTTGTGCAGTTGAATATCAGACAT 2581 Query 37219 TTGAAAATGGAGA 37231 | |||||||| || Sbjct 2580 TAGAAAATGGTGA 2568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132737858823904