Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028676.1 Length=149218 Score E Sequences producing significant alignments: (Bits) Value seq9425 98.7 9e-16 seq6415 89.7 5e-13 >seq9425 Length=520298 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 112769 CTTCGTGTCGAAGCCCATCGACTTTGCTTCTCCGAAGACGTCCTTGATGTCATCGCCGAT 112828 ||| |||||||||||| | ||| ||||| | |||||||||||||||| ||| |||| Sbjct 45771 CTTGGTGTCGAAGCCCGTACCCTTGGCTTCCGCATAGACGTCCTTGATGTCGTCGGCGAT 45830 Query 112829 TGTCCGCTTCTCTTCTTCGAGGCGTTCGATACGCTCGATGAAAGCTCTCAGCTG 112882 ||| ||||||||| ||||| || ||||| |||||||||| || | || ||| Sbjct 45831 CGTCTTCTTCTCTTCCTCGAGCCGCTCGATGCGCTCGATGAGTGCCCGCAACTG 45884 >seq6415 Length=247467 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/168 (73%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 120232 CCTTCCAGGAACCAGAGAAGCTCGCTTACGACGGCTTCCCACTGCAGCTTCTTGGTAGTC 120291 ||||| |||||||| || |||||| | | || | | ||||||||||||| ||| Sbjct 53104 CCTTC-AGGAACCACAGCAGCTCGATGATGATCGAGCGCAGGTGCAGCTTCTTGGAGGTC 53046 Query 120292 ATTGCAGGAAAGCCTTTGGCCAGATCAAAGCGGATCTGACGACCGAAAACAGATCGTGTG 120351 | | || ||||| ||||||||||| ||||||||||| || ||||| || | ||| Sbjct 53045 AGAACCGGGAAGCCCTTGGCCAGATCGAAGCGGATCTGCCGGCCGAACACGCCCAGCGTG 52986 Query 120352 CCTGTACCCGTTCGGTCTCCAGCG-TCTACACCGTTCGAGACGATGTC 120398 || || ||||| ||||| || ||| | || |||||| || |||||| Sbjct 52985 CCGGTGCCCGTGCGGTCGCC-GCGCTGAACGCCGTTCTCGAGGATGTC 52939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477279741139920