Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028676.1
Length=149218
Score E
Sequences producing significant alignments: (Bits) Value
seq9425 98.7 9e-16
seq6415 89.7 5e-13
>seq9425
Length=520298
Score = 98.7 bits (108), Expect = 9e-16
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 112769 CTTCGTGTCGAAGCCCATCGACTTTGCTTCTCCGAAGACGTCCTTGATGTCATCGCCGAT 112828
||| |||||||||||| | ||| ||||| | |||||||||||||||| ||| ||||
Sbjct 45771 CTTGGTGTCGAAGCCCGTACCCTTGGCTTCCGCATAGACGTCCTTGATGTCGTCGGCGAT 45830
Query 112829 TGTCCGCTTCTCTTCTTCGAGGCGTTCGATACGCTCGATGAAAGCTCTCAGCTG 112882
||| ||||||||| ||||| || ||||| |||||||||| || | || |||
Sbjct 45831 CGTCTTCTTCTCTTCCTCGAGCCGCTCGATGCGCTCGATGAGTGCCCGCAACTG 45884
>seq6415
Length=247467
Score = 89.7 bits (98), Expect = 5e-13
Identities = 123/168 (73%), Gaps = 3/168 (2%)
Strand=Plus/Minus
Query 120232 CCTTCCAGGAACCAGAGAAGCTCGCTTACGACGGCTTCCCACTGCAGCTTCTTGGTAGTC 120291
||||| |||||||| || |||||| | | || | | ||||||||||||| |||
Sbjct 53104 CCTTC-AGGAACCACAGCAGCTCGATGATGATCGAGCGCAGGTGCAGCTTCTTGGAGGTC 53046
Query 120292 ATTGCAGGAAAGCCTTTGGCCAGATCAAAGCGGATCTGACGACCGAAAACAGATCGTGTG 120351
| | || ||||| ||||||||||| ||||||||||| || ||||| || | |||
Sbjct 53045 AGAACCGGGAAGCCCTTGGCCAGATCGAAGCGGATCTGCCGGCCGAACACGCCCAGCGTG 52986
Query 120352 CCTGTACCCGTTCGGTCTCCAGCG-TCTACACCGTTCGAGACGATGTC 120398
|| || ||||| ||||| || ||| | || |||||| || ||||||
Sbjct 52985 CCGGTGCCCGTGCGGTCGCC-GCGCTGAACGCCGTTCTCGAGGATGTC 52939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477279741139920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |