Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028699.1
Length=40740
Score E
Sequences producing significant alignments: (Bits) Value
seq8065 95.1 3e-15
seq659 80.6 7e-11
>seq8065
Length=27066
Score = 95.1 bits (104), Expect = 3e-15
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 27209 GATACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTGCTTATCAGGAAA 27268
||| || ||||||||||||||||| || ||||||| ||||| || | |||||||| ||
Sbjct 26777 GATGCGCGACCAGCCATCAACACCAACAACAGGGATTATCCCTTTATTTTTATCAGGGAA 26718
Query 27269 GGCGTAAATTTCTTTCGTCCACGGATTAAG 27298
|| || |||||||| ||||||||||||||
Sbjct 26717 AGCATATATTTCTTTGGTCCACGGATTAAG 26688
>seq659
Length=6232
Score = 80.6 bits (88), Expect = 7e-11
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 27210 ATACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTGCTTATCAGGAAAG 27269
|| || ||||| ||||||||||| || ||||| | ||| || || | |||||||| |||
Sbjct 903 ATGCGTGACCAACCATCAACACCAACAACAGGTATGATTCCTTTATTTTTATCAGGGAAG 962
Query 27270 GCGTAAATTTCTTTCGTCCACGGATTAAG 27298
||||| || || || ||||| ||||||||
Sbjct 963 GCGTATATCTCCTTAGTCCAAGGATTAAG 991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130223108606116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |