Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq8065 95.1 3e-15 seq659 80.6 7e-11 >seq8065 Length=27066 Score = 95.1 bits (104), Expect = 3e-15 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 27209 GATACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTGCTTATCAGGAAA 27268 ||| || ||||||||||||||||| || ||||||| ||||| || | |||||||| || Sbjct 26777 GATGCGCGACCAGCCATCAACACCAACAACAGGGATTATCCCTTTATTTTTATCAGGGAA 26718 Query 27269 GGCGTAAATTTCTTTCGTCCACGGATTAAG 27298 || || |||||||| |||||||||||||| Sbjct 26717 AGCATATATTTCTTTGGTCCACGGATTAAG 26688 >seq659 Length=6232 Score = 80.6 bits (88), Expect = 7e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27210 ATACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTGCTTATCAGGAAAG 27269 || || ||||| ||||||||||| || ||||| | ||| || || | |||||||| ||| Sbjct 903 ATGCGTGACCAACCATCAACACCAACAACAGGTATGATTCCTTTATTTTTATCAGGGAAG 962 Query 27270 GCGTAAATTTCTTTCGTCCACGGATTAAG 27298 ||||| || || || ||||| |||||||| Sbjct 963 GCGTATATCTCCTTAGTCCAAGGATTAAG 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130223108606116