Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq6169 102 8e-17 >seq6169 Length=202695 Score = 102 bits (112), Expect = 8e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 129349 CCTTCATCAATATTAAAAGAACCATTTAATTCTGGGTCGTTGACTAGGCCTTTCCAACCT 129408 |||| ||||||||||||||| |||| | ||||| || |||| | ||||||||||| Sbjct 87900 CCTTTTTCAATATTAAAAGAATCATTCATATCTGGATCATTGATCAAACCTTTCCAACCA 87959 Query 129409 ACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATAACCA-ATAGATATTTGTCAGAAAC 129467 || ||||| || ||||||||||||||||| ||||| | | ||| | | | || || Sbjct 87960 ACGGTTGTACGAGGTTTTTCAAAATAAACACGCATGATGATATATA-AAGTATCTTTTAC 88018 Query 129468 ATGTTTTTGTAATTCTTTAAGATATTTTCCATAAGTAATAGCTTGTCCAGGGTCATGAAT 129527 | || |||| |||| | | ||| ||||| | ||| ||||||||||||| Sbjct 88019 TTTTTCACTTAATACTTTTAAACGATTTGCATAATCATGTGCTGCAACAGGGTCATGAAT 88078 Query 129528 AGAACATGGGCCGACAACAA 129547 |||||| ||||| | |||| Sbjct 88079 AGAACAAGGGCCAATCACAA 88098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518139248400360