Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028768.1
Length=49714
Score E
Sequences producing significant alignments: (Bits) Value
seq7352 93.3 1e-14
seq8424 89.7 2e-13
seq8280 89.7 2e-13
seq14363 87.8 6e-13
seq7041 86.0 2e-12
>seq7352
Length=278960
Score = 93.3 bits (102), Expect = 1e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140
||||||||| |||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 263590 TGGTCGGAGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAACAGATGCGCTACCA 263649
Query 36141 GACTGCGCTACACTCCGAA 36159
| ||||||||| |||||||
Sbjct 263650 GGCTGCGCTACGCTCCGAA 263668
>seq8424
Length=263062
Score = 89.7 bits (98), Expect = 2e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140
|||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||||||
Sbjct 49809 TGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGGTGCGCTACCA 49868
Query 36141 GACTGCGCTACACTCCG 36157
| |||||||||||||||
Sbjct 49869 GGCTGCGCTACACTCCG 49885
>seq8280
Length=144189
Score = 89.7 bits (98), Expect = 2e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140
||||||| | |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 26389 TGGTCGGGGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 26448
Query 36141 GACTGCGCTACACTCCG 36157
||||||||||| | |||
Sbjct 26449 GACTGCGCTACGCCCCG 26465
>seq14363
Length=24975
Score = 87.8 bits (96), Expect = 6e-13
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140
||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 10294 TGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 10235
Query 36141 GACTGCGCTACACTCCGA 36158
| ||||||||| ||||||
Sbjct 10234 GGCTGCGCTACGCTCCGA 10217
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 2e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140
|||||||||| ||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 50069 TGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 50128
Query 36141 GACTGCGCTACACTCCG 36157
|||||||||||||||||
Sbjct 50129 GACTGCGCTACACTCCG 50145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158934773306408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |