Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028768.1 Length=49714 Score E Sequences producing significant alignments: (Bits) Value seq7352 93.3 1e-14 seq8424 89.7 2e-13 seq8280 89.7 2e-13 seq14363 87.8 6e-13 seq7041 86.0 2e-12 >seq7352 Length=278960 Score = 93.3 bits (102), Expect = 1e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| |||||| |||||| ||||||||||||||||| ||||||||||||| Sbjct 263590 TGGTCGGAGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAACAGATGCGCTACCA 263649 Query 36141 GACTGCGCTACACTCCGAA 36159 | ||||||||| ||||||| Sbjct 263650 GGCTGCGCTACGCTCCGAA 263668 >seq8424 Length=263062 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 |||||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||| Sbjct 49809 TGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGGTGCGCTACCA 49868 Query 36141 GACTGCGCTACACTCCG 36157 | ||||||||||||||| Sbjct 49869 GGCTGCGCTACACTCCG 49885 >seq8280 Length=144189 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||| | |||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 26389 TGGTCGGGGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 26448 Query 36141 GACTGCGCTACACTCCG 36157 ||||||||||| | ||| Sbjct 26449 GACTGCGCTACGCCCCG 26465 >seq14363 Length=24975 Score = 87.8 bits (96), Expect = 6e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 10294 TGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 10235 Query 36141 GACTGCGCTACACTCCGA 36158 | ||||||||| |||||| Sbjct 10234 GGCTGCGCTACGCTCCGA 10217 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 |||||||||| ||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 50069 TGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 50128 Query 36141 GACTGCGCTACACTCCG 36157 ||||||||||||||||| Sbjct 50129 GACTGCGCTACACTCCG 50145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158934773306408