Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq9538 194 6e-45 seq7053 129 2e-25 seq10237 114 5e-21 seq10921 102 3e-17 seq7425 98.7 4e-16 seq6031 95.1 5e-15 seq1061 95.1 5e-15 seq12197 87.8 7e-13 >seq9538 Length=646221 Score = 194 bits (214), Expect = 6e-45 Identities = 338/483 (70%), Gaps = 18/483 (4%) Strand=Plus/Plus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| || ||| | ||| | ||||| | ||| ||||||||||| ||| |||| || Sbjct 517968 AAGGCAAAACTCGTCATCATCGACGAATGCTCGATGGTGGACGAACAGCTGGGGCGCGAT 518027 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 |||||||| ||||| ||| | | | ||||||||||| |||||||||||||| || Sbjct 518028 CTGCTGTCTTTCGGCACGCCCGTTTTGGTGCTGGGCGACCCGGCCCAGCTGCCGCCGATC 518087 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 || | ||| ||||||||| |||| || | || | || || ||||| ||||| || Sbjct 518088 TCCGGTGGCGGCTTCTTCACCGAGCACGAGCCGGATTATCTGCTCACCGAGATCCATCGC 518147 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCTG 32918 ||||| |||||||||||||||||| | || | | | ||| || |||||| | | | Sbjct 518148 CAGGCGCGCGACAACCCGATCATCAGGCTGGCACTCGACGTGCGTGAAGGCCG---CGAG 518204 Query 32919 TCCCTG--GGTCG-CTACGG-GGAGAGCGAGGTG---GTGCGCATGGCTGACTTCCAGCG 32971 | | || || || || || | | || ||||| | |||| || || || || Sbjct 518205 TTCATGAAGGGCGACTTTGGCGCCGCGC-AGGTGATCGGGCGCGAGGATG---TCACGCA 518260 Query 32972 CGACTGGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTA 33031 ||| |||||| ||||||||||| | |||||||| || | || ||||| ||| Sbjct 518261 GGACCTGGTGTTGAAGGCCGACCAGGTGCTGGTCGGTCGCAATCAGACGCGCCGCCGCTA 518320 Query 33032 CAACCGCCGCATCCGCGAGCTCCGAGGAGCCGCTCAGGCG--TACCCGCACCAGGGAGAC 33089 ||||| ||| | |||||||| || | | | | | || || ||||| || ||| Sbjct 518321 CAACCAGCGCCTGCGCGAGCT--GAAGGGGTTCACCGCCGACTATCCGCAAGCCGGCGAC 518378 Query 33090 AAGCTGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACG 33149 ||||||||||||||||| ||| | | || | || ||||| ||||||||| | |||| | Sbjct 518379 AAGCTGGTCTGCCTGCGCAACGATCCCGCCAAGGGGCTGCTCAACGGCTCGTTGTGGAAG 518438 Query 33150 GTG 33152 ||| Sbjct 518439 GTG 518441 Score = 96.9 bits (106), Expect = 1e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393 |||||||||||||| |||||||| || ||||||||||||||||| || | ||||||| Sbjct 517710 TTCCGCCTGTTCGGTTACGCCGGCACCGGCAAGACCACGCTGGCGCGCTATTTCGCCGAA 517769 Query 32394 GGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAAG 32453 |||||||| || | ||||| || ||||| ||||| || | || ||| Sbjct 517770 CATGTCGACGGCCAGGTGCAATTCGCGGCTTTCACCGGCAAGGCGGCGCAGGTGCTGCGT 517829 Query 32454 ACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGATCTACACCCCG 32504 |||||||| ||| || |||||||||| |||||||||| |||| Sbjct 517830 TCGAAGGGCGCGGTGAATGCCCGCACCATCCATTCGCTGATCTACCGCCCG 517880 >seq7053 Length=464797 Score = 129 bits (142), Expect = 2e-25 Identities = 325/483 (67%), Gaps = 26/483 (5%) Strand=Plus/Minus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 |||||| |||| | ||| | || || | || ||||||||||||||| | || | || Sbjct 49955 AAGGCGGCGCTCATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGAT 49896 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 ||| || |||||| ||| ||||||| || ||||| |||| ||||||||||| || Sbjct 49895 CTGATGAGCTTCGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTT 49836 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 ||| | ||| |||||||| ||||| || | || | ||| ||| | || ||||| || Sbjct 49835 TCGGGCGGCGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGG 49776 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCG-CAT---CGTCCGCGAAGGCGGTGC 32914 |||||| ||||| || |||||| | ||||| ||| || ||||||||| ||| Sbjct 49775 CAGGCCAAGGACAATCCCATCATCCA----TCTCGCCATGGATGTGCGCGAAGGCCGTGA 49720 Query 32915 CCTGTCCCTGGGTCGCTACGGGGAGAGCG-AGGTGGTGCGCATGGCTGACTTCCAGCGCG 32973 | | | | || | || ||| ||||| | || | | || | || Sbjct 49719 GATCATGC-GCGGCGATTATGGTTCCGCGCAGGTGATTTCCAAGTCCGAGGTGACGC--- 49664 Query 32974 ACTGGGT-GTTC--CAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCT 33030 | | | | |||| | ||||| ||| | || || || | || ||| ||||| || Sbjct 49663 AGTCGCTCGTTCTGGAAGCCGATCAGGTGCTTGTGGGCACCAATCGCACGCGCCGCCGCT 49604 Query 33031 ACAACCGCCGCATCCGCGAGCTCCGAGGAGCCGCTCAGGCG---TACCCGCACCAGGGAG 33087 |||||| || |||||||||| || | || | | |||| || ||||| ||| | Sbjct 49603 ACAACCAGCGTCTCCGCGAGCT--GAAGGGCTTCAC-GGCGGATTATCCGCAGTCGGGCG 49547 Query 33088 ACAAGCTGGTCTGCCTGCGGAACAACCACGACTCTGGCCTG----CTGAACGGCTCGCTC 33143 |||||||||||||||| ||||| | | | | |||||| ||||||||||||||| Sbjct 49546 ACAAGCTGGTCTGCCTCAGGAACGATCCGGCCAAGGGCCTGCTGACTGAACGGCTCGCTC 49487 Query 33144 TGG 33146 ||| Sbjct 49486 TGG 49484 >seq10237 Length=30126 Score = 114 bits (126), Expect = 5e-21 Identities = 291/435 (67%), Gaps = 16/435 (4%) Strand=Plus/Minus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCA 5879 ||||| | | | || || |||||| || || || || ||||||||||||||| | ||| Sbjct 24877 ACGACATCAACTTCGGCATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTAGCCA 24818 Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | ||| | ||| ||| | | | | | |||||||| || | || || || Sbjct 24817 GCGCGGTCGAAGCC--CTGAACGAATCGCGGGTGCAGCGCCTGATCTTGGTGCGCCCGGC 24760 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999 || ||||| | |||||||| ||||||||||||||| || | ||||| | | || Sbjct 24759 GGTGGAGGCCGGCGAGAAGCTGGGCTTCCTGCCCGGCGACCTGAGCCAGAAGGTCGATCC 24700 Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCCCG---ACGATGACGAA 6056 |||||| ||| || ||||| || ||| || | ||| | | | || || Sbjct 24699 CTACCTGCGACCGCTGTACGACGCCCTGTACGAGATGATGGGCGTGGAAAAGGTGGTCAA 24640 Query 6057 GCGCCTCCTCGAGTCG--CGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGG 6114 || | || ||| | || || | ||| |||| ||||||||||||||||| ||||| Sbjct 24639 GC---TGCTGGAGAAGAACGTCATC--GAGATCGCGCCGCTGGCCTACATGCGCGGCCGC 24585 Query 6115 ACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGAC 6173 ||| ||||||| ||| | | || ||||| |||||| ||||| || | |||| Sbjct 24584 ACGCTCAACGATGCGTTCGTGATCCTGGACGAAGCACAGAACACCACCATCGAG-CAGAT 24526 Query 6174 CGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGC 6233 | || | ||||||||||||||| ||| | | || || | | |||||||| | | Sbjct 24525 GAAGATGTTCCTGACCCGCCTGGGCTACGGCTCCACTGCGGTGGTCACCGGTGACCTGAC 24466 Query 6234 CCAGTGCGACCTGCC 6248 |||| ||||||||| Sbjct 24465 CCAGACCGACCTGCC 24451 >seq10921 Length=44944 Score = 102 bits (112), Expect = 3e-17 Identities = 262/389 (67%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACC 5881 ||||| | ||| || || |||||| || || || || ||||||| ||| ||| | | Sbjct 40792 ACGACATCACCTTCGGCATCGGCCCGGCCGGCACCGGCAAGACCTACCTAGCCGTGGCCT 40733 Query 5882 ACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCG 5941 || | || | ||||||| | | | | |||||| |||| |||| || || |||| Sbjct 40732 GCGCCGTGGACGCGCTGGAGCGCAGCGCCGTGCAGCGCATCGTGCTCACGCGCCCGGCCG 40673 Query 5942 TTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACG-AGAAGATGGCACCC 6000 | || || | ||| || ||||||||||||||| | ||| ||||| | | ||| Sbjct 40672 TGGAAGCGGGCGAGCGCCTGGGCTTCCTGCCCGGCGACCT-CACGCAGAAGGTCGACCCC 40614 Query 6001 TACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGC-CCGACGATG-ACGAAGC 6058 ||||| |||| || |||||| | |||||| | ||| ||| | | | || Sbjct 40613 TACCTGCGCCCGCTGTACGACGCGCTCTACGACCTCATGGGCTACGAGAAGGTGCAAAAG 40554 Query 6059 GCCTCCTCGAGTCGCGCCA---GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGA 6115 |||| |||| |||| | ||||||| |||| |||||||||| |||||| || || | Sbjct 40553 GCCT--TCGA---GCGCAATGTGCTGGAGATCGCGCCGCTGGCCTTCATGCGCGGGCGCA 40499 Query 6116 CGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-CCCGCGCCAGACC 6174 || | ||| || | | | || || |||||| ||||||| |||| |||| | |||| Sbjct 40498 CGCTGAACAACGCCTTCGTCATCCTGGACGAGGCGCAGAACACCACGCCCGAG-CAGATG 40440 Query 6175 GCGCTGCTGGTGACCCGCCTGGGCTTCGG 6203 | || | | || ||| | |||||||| Sbjct 40439 AAGATGTTCCTCACGCGCATCGGCTTCGG 40411 >seq7425 Length=164840 Score = 98.7 bits (108), Expect = 4e-16 Identities = 193/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 5842 GGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCCTGCGCCTGCTGGAG 5901 || || || || || || |||||||||||||| | ||| ||| | | ||||| | Sbjct 153910 GGTCCCGCCGGCACCGGCAAGACCTTCCTGGCGGTGGCCCATGGCGCGGGGATGCTGCTG 153969 Query 5902 GCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTC 5961 ||| ||| || | ||| | || ||||||| |||||||| ||||| | |||||||| Sbjct 153970 CGCGGCGAGGTCGACCGCTTGATCGTCACCCGCCCCGCCGTCGAGGCTGGCGAGAAGCTG 154029 Query 5962 GGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGAC 6021 ||||||||||| ||| | || |||||||| | | || ||| | | ||| | ||| Sbjct 154030 GGCTTCCTGCCGGGCGATCTGAACGAGAAGGTCGATCCGTACATGGCGCCGGTCTGGGAA 154089 Query 6022 GCGGTGATCGACCTGGTCGGC-CCGACGATGACGAAGCG-CCTCCTC--GAGTCGCGCCA 6077 || ||| |||| | | ||| ||||| | || ||| | || || || || | Sbjct 154090 GCCCTGACCGACATCATGGGCGCCGACCA--AC--TGCGTCGTCGTCGGGAAAAGCTGGA 154145 Query 6078 GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACG 6117 | | |||||||| ||| | |||| |||||| ||||| ||| Sbjct 154146 GATCGAGGTCGCGCCGATCGCCTTCATGCGCGGCCGCACG 154185 >seq6031 Length=21921 Score = 95.1 bits (104), Expect = 5e-15 Identities = 245/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 5842 GGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCCTGCGCCTGCTGGAG 5901 ||||| ||||| || || ||||||| ||||| || ||| | | ||| ||| Sbjct 14735 GGCCCGGCAGGCACCGGCAAGACCTATCTGGCGGTCGCCCAGGCGGTCAGCCAGCTCATC 14794 Query 5902 GCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTC 5961 |||| || | ||||| || || |||| |||||||| ||||| | ||||||||| Sbjct 14795 ACCGGCAGCGTCGACCGCCTGATCCTCTCCCGTCCCGCCGTCGAGGCGGGCGAGAAGCTC 14854 Query 5962 GGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGAC 6021 ||||||||||||||| || | || ||| | | ||||||||| ||||| || Sbjct 14855 GGCTTCCTGCCCGGCGACATGAAGGAAAAGGTCGATCCCTACCTCCGGCCGATCTACGAT 14914 Query 6022 GCGGTGATCGACCTGGT-CGGCCCGACGATGACGAA--GCGCCTCCTCGAGTCGCGCCAG 6078 ||| || |||| | | | | |||| | | |||| ||| | | | || || || || Sbjct 14915 GCGCTGCACGACACGCTGCCGGCCGAACAGGTCGAACGGCGGAT-CGCCAG-CG-GCGAG 14971 Query 6079 CTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTC 6138 | ||| |||| ||||| |||| |||||| || || || | | | | | |||||| Sbjct 14972 ATCGAGATCGCGCCGCTCGCCTTCATGCGCGGTCGTACCCTGGCCAATGCCTTCATCGT- 15030 Query 6139 GCT-GACGAGATGCAGAACGCCACC-CCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGG 6196 ||| |||||| ||||||| ||||| ||| ||||| | || | |||||||| | | Sbjct 15031 GCTGGACGAGGCGCAGAACACCACCATCGC-CCAGATGAAGATGTTCCTGACCCGCTTTG 15089 Query 6197 GC 6198 || Sbjct 15090 GC 15091 >seq1061 Length=1113 Score = 95.1 bits (104), Expect = 5e-15 Identities = 73/84 (87%), Gaps = 6/84 (7%) Strand=Plus/Plus Query 33288 GACGAGTTCGACTACGGCTACGCCCTGACCGTGCACAAGAGCCAGGGCTCCCAGTGGGAC 33347 |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 1012 GACGAGTTCGACTACGGCTACGTCCTGACCGTGCACAAGTCGCAGGGCTCGCAGTGGGAC 1071 Query 33348 GA---CGTGCTCGTCATCGACGAG 33368 || |||||| || |||||||| Sbjct 1072 GATGTCGTGCT-GT--TCGACGAG 1092 >seq12197 Length=12691 Score = 87.8 bits (96), Expect = 7e-13 Identities = 194/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 5967 CCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGT 6026 |||||||||| || |||||||| | | |||||| | | ||| || ||| ||| | Sbjct 6622 CCTGCCCGGCGACATGAACGAGAAGGTCGACCCCTACATGGCGCCGGTGTGGGAGGCGCT 6681 Query 6027 GATCGACCTGGTCGGC-CCGACGATGACGAAGCGCCTCCTCGAGTCGCGCCAGCTGGAGG 6085 | |||| | |||| ||||| | | | |||| || ||| | || || | |||| Sbjct 6682 GTCCGACATCCTCGGGGCCGACCA-GCTGCGCCGCCGCCGCGACAAGGGCGAGATCGAGG 6740 Query 6086 TCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACG 6145 | || ||| | |||| |||||| ||||| || | ||| || | | | || ||| |||| Sbjct 6741 TGGCTCCGATCGCCTTCATGCGCGGCCGCACCCTGAACCACGCCTTCGTCATCGTCGACG 6800 Query 6146 AGATGCAGAACGCCACCCCGCGCCAGACCGC----GCTGCTGGTGACCCGCCTGGGCTTC 6201 || |||||||||| | ||||| | | || | || || | |||||||||||| Sbjct 6801 AGGCGCAGAACGCCTC---GCGCCTG-CAGCTGAAGATGGTGCTCACCCGCCTGGGCGAG 6856 Query 6202 GGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGC 6247 ||| | ||| | ||| ||| |||||| ||||| |||||||| Sbjct 6857 GGGGCCAAGATGGCGGTGACCGGCGACCCGACCCAGGTCGACCTGC 6902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191453757038720