Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028770.1
Length=59878
Score E
Sequences producing significant alignments: (Bits) Value
seq9538 194 6e-45
seq7053 129 2e-25
seq10237 114 5e-21
seq10921 102 3e-17
seq7425 98.7 4e-16
seq6031 95.1 5e-15
seq1061 95.1 5e-15
seq12197 87.8 7e-13
>seq9538
Length=646221
Score = 194 bits (214), Expect = 6e-45
Identities = 338/483 (70%), Gaps = 18/483 (4%)
Strand=Plus/Plus
Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738
||||| || ||| | ||| | ||||| | ||| ||||||||||| ||| |||| ||
Sbjct 517968 AAGGCAAAACTCGTCATCATCGACGAATGCTCGATGGTGGACGAACAGCTGGGGCGCGAT 518027
Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798
|||||||| ||||| ||| | | | ||||||||||| |||||||||||||| ||
Sbjct 518028 CTGCTGTCTTTCGGCACGCCCGTTTTGGTGCTGGGCGACCCGGCCCAGCTGCCGCCGATC 518087
Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858
|| | ||| ||||||||| |||| || | || | || || ||||| ||||| ||
Sbjct 518088 TCCGGTGGCGGCTTCTTCACCGAGCACGAGCCGGATTATCTGCTCACCGAGATCCATCGC 518147
Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCTG 32918
||||| |||||||||||||||||| | || | | | ||| || |||||| | | |
Sbjct 518148 CAGGCGCGCGACAACCCGATCATCAGGCTGGCACTCGACGTGCGTGAAGGCCG---CGAG 518204
Query 32919 TCCCTG--GGTCG-CTACGG-GGAGAGCGAGGTG---GTGCGCATGGCTGACTTCCAGCG 32971
| | || || || || || | | || ||||| | |||| || || || ||
Sbjct 518205 TTCATGAAGGGCGACTTTGGCGCCGCGC-AGGTGATCGGGCGCGAGGATG---TCACGCA 518260
Query 32972 CGACTGGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTA 33031
||| |||||| ||||||||||| | |||||||| || | || ||||| |||
Sbjct 518261 GGACCTGGTGTTGAAGGCCGACCAGGTGCTGGTCGGTCGCAATCAGACGCGCCGCCGCTA 518320
Query 33032 CAACCGCCGCATCCGCGAGCTCCGAGGAGCCGCTCAGGCG--TACCCGCACCAGGGAGAC 33089
||||| ||| | |||||||| || | | | | | || || ||||| || |||
Sbjct 518321 CAACCAGCGCCTGCGCGAGCT--GAAGGGGTTCACCGCCGACTATCCGCAAGCCGGCGAC 518378
Query 33090 AAGCTGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACG 33149
||||||||||||||||| ||| | | || | || ||||| ||||||||| | |||| |
Sbjct 518379 AAGCTGGTCTGCCTGCGCAACGATCCCGCCAAGGGGCTGCTCAACGGCTCGTTGTGGAAG 518438
Query 33150 GTG 33152
|||
Sbjct 518439 GTG 518441
Score = 96.9 bits (106), Expect = 1e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393
|||||||||||||| |||||||| || ||||||||||||||||| || | |||||||
Sbjct 517710 TTCCGCCTGTTCGGTTACGCCGGCACCGGCAAGACCACGCTGGCGCGCTATTTCGCCGAA 517769
Query 32394 GGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAAG 32453
|||||||| || | ||||| || ||||| ||||| || | || |||
Sbjct 517770 CATGTCGACGGCCAGGTGCAATTCGCGGCTTTCACCGGCAAGGCGGCGCAGGTGCTGCGT 517829
Query 32454 ACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGATCTACACCCCG 32504
|||||||| ||| || |||||||||| |||||||||| ||||
Sbjct 517830 TCGAAGGGCGCGGTGAATGCCCGCACCATCCATTCGCTGATCTACCGCCCG 517880
>seq7053
Length=464797
Score = 129 bits (142), Expect = 2e-25
Identities = 325/483 (67%), Gaps = 26/483 (5%)
Strand=Plus/Minus
Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738
|||||| |||| | ||| | || || | || ||||||||||||||| | || | ||
Sbjct 49955 AAGGCGGCGCTCATCATCATCGATGAATGTTCGATGGTGGACGAGCAGCTCGGCAAGGAT 49896
Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798
||| || |||||| ||| ||||||| || ||||| |||| ||||||||||| ||
Sbjct 49895 CTGATGAGCTTCGGCACGCCCATCCTCGTGCTCGGCGATCCCGGACAGCTGCCGCCGGTT 49836
Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858
||| | ||| |||||||| ||||| || | || | ||| ||| | || ||||| ||
Sbjct 49835 TCGGGCGGCGGCTTCTTCACGGAGCAGGAGCCGGATTACCTGCTGTCGGAAATCCATCGG 49776
Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCG-CAT---CGTCCGCGAAGGCGGTGC 32914
|||||| ||||| || |||||| | ||||| ||| || ||||||||| |||
Sbjct 49775 CAGGCCAAGGACAATCCCATCATCCA----TCTCGCCATGGATGTGCGCGAAGGCCGTGA 49720
Query 32915 CCTGTCCCTGGGTCGCTACGGGGAGAGCG-AGGTGGTGCGCATGGCTGACTTCCAGCGCG 32973
| | | | || | || ||| ||||| | || | | || | ||
Sbjct 49719 GATCATGC-GCGGCGATTATGGTTCCGCGCAGGTGATTTCCAAGTCCGAGGTGACGC--- 49664
Query 32974 ACTGGGT-GTTC--CAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCT 33030
| | | | |||| | ||||| ||| | || || || | || ||| ||||| ||
Sbjct 49663 AGTCGCTCGTTCTGGAAGCCGATCAGGTGCTTGTGGGCACCAATCGCACGCGCCGCCGCT 49604
Query 33031 ACAACCGCCGCATCCGCGAGCTCCGAGGAGCCGCTCAGGCG---TACCCGCACCAGGGAG 33087
|||||| || |||||||||| || | || | | |||| || ||||| ||| |
Sbjct 49603 ACAACCAGCGTCTCCGCGAGCT--GAAGGGCTTCAC-GGCGGATTATCCGCAGTCGGGCG 49547
Query 33088 ACAAGCTGGTCTGCCTGCGGAACAACCACGACTCTGGCCTG----CTGAACGGCTCGCTC 33143
|||||||||||||||| ||||| | | | | |||||| |||||||||||||||
Sbjct 49546 ACAAGCTGGTCTGCCTCAGGAACGATCCGGCCAAGGGCCTGCTGACTGAACGGCTCGCTC 49487
Query 33144 TGG 33146
|||
Sbjct 49486 TGG 49484
>seq10237
Length=30126
Score = 114 bits (126), Expect = 5e-21
Identities = 291/435 (67%), Gaps = 16/435 (4%)
Strand=Plus/Minus
Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCA 5879
||||| | | | || || |||||| || || || || ||||||||||||||| | |||
Sbjct 24877 ACGACATCAACTTCGGCATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTAGCCA 24818
Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939
| ||| | ||| ||| | | | | | |||||||| || | || || ||
Sbjct 24817 GCGCGGTCGAAGCC--CTGAACGAATCGCGGGTGCAGCGCCTGATCTTGGTGCGCCCGGC 24760
Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999
|| ||||| | |||||||| ||||||||||||||| || | ||||| | | ||
Sbjct 24759 GGTGGAGGCCGGCGAGAAGCTGGGCTTCCTGCCCGGCGACCTGAGCCAGAAGGTCGATCC 24700
Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCCCG---ACGATGACGAA 6056
|||||| ||| || ||||| || ||| || | ||| | | | || ||
Sbjct 24699 CTACCTGCGACCGCTGTACGACGCCCTGTACGAGATGATGGGCGTGGAAAAGGTGGTCAA 24640
Query 6057 GCGCCTCCTCGAGTCG--CGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGG 6114
|| | || ||| | || || | ||| |||| ||||||||||||||||| |||||
Sbjct 24639 GC---TGCTGGAGAAGAACGTCATC--GAGATCGCGCCGCTGGCCTACATGCGCGGCCGC 24585
Query 6115 ACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGAC 6173
||| ||||||| ||| | | || ||||| |||||| ||||| || | ||||
Sbjct 24584 ACGCTCAACGATGCGTTCGTGATCCTGGACGAAGCACAGAACACCACCATCGAG-CAGAT 24526
Query 6174 CGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGC 6233
| || | ||||||||||||||| ||| | | || || | | |||||||| | |
Sbjct 24525 GAAGATGTTCCTGACCCGCCTGGGCTACGGCTCCACTGCGGTGGTCACCGGTGACCTGAC 24466
Query 6234 CCAGTGCGACCTGCC 6248
|||| |||||||||
Sbjct 24465 CCAGACCGACCTGCC 24451
>seq10921
Length=44944
Score = 102 bits (112), Expect = 3e-17
Identities = 262/389 (67%), Gaps = 14/389 (4%)
Strand=Plus/Minus
Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACC 5881
||||| | ||| || || |||||| || || || || ||||||| ||| ||| | |
Sbjct 40792 ACGACATCACCTTCGGCATCGGCCCGGCCGGCACCGGCAAGACCTACCTAGCCGTGGCCT 40733
Query 5882 ACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCG 5941
|| | || | ||||||| | | | | |||||| |||| |||| || || ||||
Sbjct 40732 GCGCCGTGGACGCGCTGGAGCGCAGCGCCGTGCAGCGCATCGTGCTCACGCGCCCGGCCG 40673
Query 5942 TTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACG-AGAAGATGGCACCC 6000
| || || | ||| || ||||||||||||||| | ||| ||||| | | |||
Sbjct 40672 TGGAAGCGGGCGAGCGCCTGGGCTTCCTGCCCGGCGACCT-CACGCAGAAGGTCGACCCC 40614
Query 6001 TACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGC-CCGACGATG-ACGAAGC 6058
||||| |||| || |||||| | |||||| | ||| ||| | | | ||
Sbjct 40613 TACCTGCGCCCGCTGTACGACGCGCTCTACGACCTCATGGGCTACGAGAAGGTGCAAAAG 40554
Query 6059 GCCTCCTCGAGTCGCGCCA---GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGA 6115
|||| |||| |||| | ||||||| |||| |||||||||| |||||| || || |
Sbjct 40553 GCCT--TCGA---GCGCAATGTGCTGGAGATCGCGCCGCTGGCCTTCATGCGCGGGCGCA 40499
Query 6116 CGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-CCCGCGCCAGACC 6174
|| | ||| || | | | || || |||||| ||||||| |||| |||| | ||||
Sbjct 40498 CGCTGAACAACGCCTTCGTCATCCTGGACGAGGCGCAGAACACCACGCCCGAG-CAGATG 40440
Query 6175 GCGCTGCTGGTGACCCGCCTGGGCTTCGG 6203
| || | | || ||| | ||||||||
Sbjct 40439 AAGATGTTCCTCACGCGCATCGGCTTCGG 40411
>seq7425
Length=164840
Score = 98.7 bits (108), Expect = 4e-16
Identities = 193/280 (69%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 5842 GGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCCTGCGCCTGCTGGAG 5901
|| || || || || || |||||||||||||| | ||| ||| | | ||||| |
Sbjct 153910 GGTCCCGCCGGCACCGGCAAGACCTTCCTGGCGGTGGCCCATGGCGCGGGGATGCTGCTG 153969
Query 5902 GCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTC 5961
||| ||| || | ||| | || ||||||| |||||||| ||||| | ||||||||
Sbjct 153970 CGCGGCGAGGTCGACCGCTTGATCGTCACCCGCCCCGCCGTCGAGGCTGGCGAGAAGCTG 154029
Query 5962 GGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGAC 6021
||||||||||| ||| | || |||||||| | | || ||| | | ||| | |||
Sbjct 154030 GGCTTCCTGCCGGGCGATCTGAACGAGAAGGTCGATCCGTACATGGCGCCGGTCTGGGAA 154089
Query 6022 GCGGTGATCGACCTGGTCGGC-CCGACGATGACGAAGCG-CCTCCTC--GAGTCGCGCCA 6077
|| ||| |||| | | ||| ||||| | || ||| | || || || || |
Sbjct 154090 GCCCTGACCGACATCATGGGCGCCGACCA--AC--TGCGTCGTCGTCGGGAAAAGCTGGA 154145
Query 6078 GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACG 6117
| | |||||||| ||| | |||| |||||| ||||| |||
Sbjct 154146 GATCGAGGTCGCGCCGATCGCCTTCATGCGCGGCCGCACG 154185
>seq6031
Length=21921
Score = 95.1 bits (104), Expect = 5e-15
Identities = 245/362 (68%), Gaps = 10/362 (3%)
Strand=Plus/Plus
Query 5842 GGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCCTGCGCCTGCTGGAG 5901
||||| ||||| || || ||||||| ||||| || ||| | | ||| |||
Sbjct 14735 GGCCCGGCAGGCACCGGCAAGACCTATCTGGCGGTCGCCCAGGCGGTCAGCCAGCTCATC 14794
Query 5902 GCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTC 5961
|||| || | ||||| || || |||| |||||||| ||||| | |||||||||
Sbjct 14795 ACCGGCAGCGTCGACCGCCTGATCCTCTCCCGTCCCGCCGTCGAGGCGGGCGAGAAGCTC 14854
Query 5962 GGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGAC 6021
||||||||||||||| || | || ||| | | ||||||||| ||||| ||
Sbjct 14855 GGCTTCCTGCCCGGCGACATGAAGGAAAAGGTCGATCCCTACCTCCGGCCGATCTACGAT 14914
Query 6022 GCGGTGATCGACCTGGT-CGGCCCGACGATGACGAA--GCGCCTCCTCGAGTCGCGCCAG 6078
||| || |||| | | | | |||| | | |||| ||| | | | || || || ||
Sbjct 14915 GCGCTGCACGACACGCTGCCGGCCGAACAGGTCGAACGGCGGAT-CGCCAG-CG-GCGAG 14971
Query 6079 CTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTC 6138
| ||| |||| ||||| |||| |||||| || || || | | | | | ||||||
Sbjct 14972 ATCGAGATCGCGCCGCTCGCCTTCATGCGCGGTCGTACCCTGGCCAATGCCTTCATCGT- 15030
Query 6139 GCT-GACGAGATGCAGAACGCCACC-CCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGG 6196
||| |||||| ||||||| ||||| ||| ||||| | || | |||||||| | |
Sbjct 15031 GCTGGACGAGGCGCAGAACACCACCATCGC-CCAGATGAAGATGTTCCTGACCCGCTTTG 15089
Query 6197 GC 6198
||
Sbjct 15090 GC 15091
>seq1061
Length=1113
Score = 95.1 bits (104), Expect = 5e-15
Identities = 73/84 (87%), Gaps = 6/84 (7%)
Strand=Plus/Plus
Query 33288 GACGAGTTCGACTACGGCTACGCCCTGACCGTGCACAAGAGCCAGGGCTCCCAGTGGGAC 33347
|||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 1012 GACGAGTTCGACTACGGCTACGTCCTGACCGTGCACAAGTCGCAGGGCTCGCAGTGGGAC 1071
Query 33348 GA---CGTGCTCGTCATCGACGAG 33368
|| |||||| || ||||||||
Sbjct 1072 GATGTCGTGCT-GT--TCGACGAG 1092
>seq12197
Length=12691
Score = 87.8 bits (96), Expect = 7e-13
Identities = 194/286 (68%), Gaps = 10/286 (3%)
Strand=Plus/Plus
Query 5967 CCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGT 6026
|||||||||| || |||||||| | | |||||| | | ||| || ||| ||| |
Sbjct 6622 CCTGCCCGGCGACATGAACGAGAAGGTCGACCCCTACATGGCGCCGGTGTGGGAGGCGCT 6681
Query 6027 GATCGACCTGGTCGGC-CCGACGATGACGAAGCGCCTCCTCGAGTCGCGCCAGCTGGAGG 6085
| |||| | |||| ||||| | | | |||| || ||| | || || | ||||
Sbjct 6682 GTCCGACATCCTCGGGGCCGACCA-GCTGCGCCGCCGCCGCGACAAGGGCGAGATCGAGG 6740
Query 6086 TCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACG 6145
| || ||| | |||| |||||| ||||| || | ||| || | | | || ||| ||||
Sbjct 6741 TGGCTCCGATCGCCTTCATGCGCGGCCGCACCCTGAACCACGCCTTCGTCATCGTCGACG 6800
Query 6146 AGATGCAGAACGCCACCCCGCGCCAGACCGC----GCTGCTGGTGACCCGCCTGGGCTTC 6201
|| |||||||||| | ||||| | | || | || || | ||||||||||||
Sbjct 6801 AGGCGCAGAACGCCTC---GCGCCTG-CAGCTGAAGATGGTGCTCACCCGCCTGGGCGAG 6856
Query 6202 GGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGC 6247
||| | ||| | ||| ||| |||||| ||||| ||||||||
Sbjct 6857 GGGGCCAAGATGGCGGTGACCGGCGACCCGACCCAGGTCGACCTGC 6902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191453757038720
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