Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq9676 82.4 9e-11 >seq9676 Length=343241 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16896 TGGGTTAAAAACGAACGAACTGGAACACAATGTCTGACACTAATCAACGCCGATTTGGTC 16955 |||||| | || |||| || || | | ||||||||| | || || || ||| | | Sbjct 84141 TGGGTTGAGAATAAACGGACGGGTAAAAGATGTCTGACCATCATTAATGCTGATCTCACC 84200 Query 16956 TATAATGTCGATCAGAACGAAGTTCCTATGGTAACAACTCGCAAAACATTTTATCGCGGC 17015 ||| |||| || | | |||| | || || || || |||| |||||| Sbjct 84201 TATGATGTTGAAAATGGTGTTTTTCCACTAGTCACCACCCGTAAAAGCTTTTATAAATCG 84260 Query 17016 GCTATTGCTGAACTGCTTGGATATCTACGAGGATACGACAATGCTGCCGATTTTCGAGCC 17075 |||||||||||| ||||||| ||| | || || ||||| ||||| || |||||| || Sbjct 84261 GCTATTGCTGAAATGCTTGGCTATTTGCGTGGTTACGATAATGCGGCAGATTTTAGAAAG 84320 Query 17076 ATAGGTTGTAACACATGGAATGCTAACGCCAACGAAAACGAAGCTTGGTTGAAGAATCCC 17135 ||| | ||| ||| |||| || |||||||| || ||| ||||| ||||| Sbjct 84321 GCAGGCACCACCACTTGGGATGCCAATGCCAACGACAATCAAGACTGGTTAGCCAATCCA 84380 Query 17136 AATCGTAAAGGTGAGGACGA 17155 | ||||| || |||| || Sbjct 84381 TACCGTAAGGGGCAGGATGA 84400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582626307232200