Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028796.1 Length=49203 Score E Sequences producing significant alignments: (Bits) Value seq11405 120 1e-22 >seq11405 Length=110570 Score = 120 bits (132), Expect = 1e-22 Identities = 108/134 (81%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 42403 CTCGACTGGGTGATTGTCGGCGGTGAGTCCGGCCCCGGTGCGCGGCCGATGCACCCTGAC 42462 || ||||||||||| |||||||| ||| ||||||||||||||| || ||||| || ||| Sbjct 75394 CTGGACTGGGTGATCGTCGGCGGCGAGAGCGGCCCCGGTGCGCGTCCCATGCATCCCGAC 75335 Query 42463 TGGGCGCGGTCA--CTGCGAGACCAATGCCAGGCCGCCGGCGTGCCGTTCCTGTTCAAGC 42520 ||||||| ||| ||||| ||||| ||| |||||| ||| | | ||| ||||||||| Sbjct 75334 TGGGCGC--TCAGCCTGCGCGACCAGTGCGAGGCCGTGGGCACGGCCTTCATGTTCAAGC 75277 Query 42521 AGCGTGGTGAGTGG 42534 || | || |||||| Sbjct 75276 AGTGGGGCGAGTGG 75263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157299865722070