Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq7352 95.1 4e-15 seq14363 91.5 5e-14 seq8424 91.5 5e-14 seq8280 89.7 2e-13 seq7041 86.0 2e-12 >seq7352 Length=278960 Score = 95.1 bits (104), Expect = 4e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| |||||| |||||| ||||||||||||||||| |||||||||| ||| Sbjct 263590 TGGTCGGAGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAACAGATGCGCTACCA 263649 Query 36329 GACTGCGCTACACTCCGAAA 36348 | ||||||||| |||||||| Sbjct 263650 GGCTGCGCTACGCTCCGAAA 263669 >seq14363 Length=24975 Score = 91.5 bits (100), Expect = 5e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 36267 TTTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGC 36326 ||||||||||| |||||||||| |||||||||||||||||||||||||||| | Sbjct 10296 TTTGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTAC 10237 Query 36327 CAGACTGCGCTACACTCCGA 36346 ||| ||||||||| |||||| Sbjct 10236 CAGGCTGCGCTACGCTCCGA 10217 >seq8424 Length=263062 Score = 91.5 bits (100), Expect = 5e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36268 TTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCC 36327 ||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| || Sbjct 49808 TTGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGGTGCGCTACC 49867 Query 36328 AGACTGCGCTACACTCCG 36345 || ||||||||||||||| Sbjct 49868 AGGCTGCGCTACACTCCG 49885 >seq8280 Length=144189 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||| | |||||| |||||| |||||||||||||||||||||||||||| ||| Sbjct 26389 TGGTCGGGGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 26448 Query 36329 GACTGCGCTACACTCCG 36345 ||||||||||| | ||| Sbjct 26449 GACTGCGCTACGCCCCG 26465 >seq7041 Length=191181 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 |||||||||| ||||||||| ||||||||| ||||||| |||||||||| ||| Sbjct 50069 TGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 50128 Query 36329 GACTGCGCTACACTCCG 36345 ||||||||||||||||| Sbjct 50129 GACTGCGCTACACTCCG 50145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154142030524924