Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028834.1
Length=48216
Score E
Sequences producing significant alignments: (Bits) Value
seq7352 95.1 4e-15
seq14363 91.5 5e-14
seq8424 91.5 5e-14
seq8280 89.7 2e-13
seq7041 86.0 2e-12
>seq7352
Length=278960
Score = 95.1 bits (104), Expect = 4e-15
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328
||||||||| |||||| |||||| ||||||||||||||||| |||||||||| |||
Sbjct 263590 TGGTCGGAGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAACAGATGCGCTACCA 263649
Query 36329 GACTGCGCTACACTCCGAAA 36348
| ||||||||| ||||||||
Sbjct 263650 GGCTGCGCTACGCTCCGAAA 263669
>seq14363
Length=24975
Score = 91.5 bits (100), Expect = 5e-14
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 36267 TTTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGC 36326
||||||||||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 10296 TTTGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTAC 10237
Query 36327 CAGACTGCGCTACACTCCGA 36346
||| ||||||||| ||||||
Sbjct 10236 CAGGCTGCGCTACGCTCCGA 10217
>seq8424
Length=263062
Score = 91.5 bits (100), Expect = 5e-14
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 36268 TTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCC 36327
||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||
Sbjct 49808 TTGGTCGGAGTGGCAGGATTCGAACCTGCGACCCCCTGATCCCAAATCAGGTGCGCTACC 49867
Query 36328 AGACTGCGCTACACTCCG 36345
|| |||||||||||||||
Sbjct 49868 AGGCTGCGCTACACTCCG 49885
>seq8280
Length=144189
Score = 89.7 bits (98), Expect = 2e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328
||||||| | |||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 26389 TGGTCGGGGCGGCAGGATTTGAACCTGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 26448
Query 36329 GACTGCGCTACACTCCG 36345
||||||||||| | |||
Sbjct 26449 GACTGCGCTACGCCCCG 26465
>seq7041
Length=191181
Score = 86.0 bits (94), Expect = 2e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328
|||||||||| ||||||||| ||||||||| ||||||| |||||||||| |||
Sbjct 50069 TGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 50128
Query 36329 GACTGCGCTACACTCCG 36345
|||||||||||||||||
Sbjct 50129 GACTGCGCTACACTCCG 50145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154142030524924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |