Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028843.1 Length=75816 Score E Sequences producing significant alignments: (Bits) Value seq9835 82.4 4e-11 seq8424 82.4 4e-11 >seq9835 Length=4128 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 66065 GGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCTA-GCGC 66123 ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1897 GGGCTCGAACCTAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAACTGAGCTATGCGC 1838 >seq8424 Length=263062 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 63275 TGTAGCGCAGCTTGGTAGCGCGCCTGATTTGGATTCAGGGGGTCGGAGGTTCAAATCCTT 63334 ||||||||||| ||||||||| |||||||||| ||||||||||| |||||| |||||| Sbjct 49880 TGTAGCGCAGCCTGGTAGCGCACCTGATTTGGGATCAGGGGGTCGCAGGTTCGAATCCTG 49821 Query 63335 CCA 63337 ||| Sbjct 49820 CCA 49818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242441896092123