Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028855.1
Length=44846
Score E
Sequences producing significant alignments: (Bits) Value
seq6169 174 5e-39
seq8151 140 9e-29
seq8225 138 3e-28
seq9034 123 7e-24
seq8226 122 2e-23
seq10131 86.0 2e-12
>seq6169
Length=202695
Score = 174 bits (192), Expect = 5e-39
Identities = 269/379 (71%), Gaps = 5/379 (1%)
Strand=Plus/Minus
Query 40538 CTTTAGAAATAAACTTCTTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 40597
|||| |||||| | | ||| |||||| || || || | |||| | ||| ||
Sbjct 3268 CTTTTCAAATAATTTACGTTCTTTAGCACGACGGTTCACAAGCCCTTGCATAACCTTGCC 3209
Query 40598 ACCAGCTTTTTTCCA-CGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAA 40656
||| |||| ||||| || | |||||| | ||||| |||| |||||| | ||| |
Sbjct 3208 ACCTCCTTTGTTCCATCGATCA-AATTGAGCTGCAGCGCCTTTATAATCTTTAGCATTTA 3150
Query 40657 GAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATA 40716
|||||||| ||||| | |||||| ||||| | |||||||||||| |||| |||||
Sbjct 3149 ACTTTTTGAGTAGTGTTGAGTCTTTAAATGCACCAGTGCCAATGTTGTAAGTCAATGATA 3090
Query 40717 CTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTT 40776
| | ||| || || |||||||| | | |||||||||||| || ||||||| || ||
Sbjct 3089 CCAAAGCATCGAACTGATTTTGGTTTAATGGAACTTTAACCGAAGTATTTACAGCAGATT 3030
Query 40777 CAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTATCGC 40836
|||| || ||||||| || | ||||| || |||||||||| || || ||||| |
Sbjct 3029 CAAATTTCTTTAAATCTTGAGCCATGTAGGACTTAGCTTGTTCAGCAGTGCAAGTATCAC 2970
Query 40837 CTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGC 40896
||||||||||| |||||| | | | ||||| || || || ||||| || |
Sbjct 2969 CTTTCTTAACTGCGACACCATT--AATTG-CAGTTGTGCCATAACCAATAGTCCAAACAC 2913
Query 40897 CAACACCATCATCATATGC 40915
| |||||||| ||||| ||
Sbjct 2912 CTACACCATCGTCATACGC 2894
>seq8151
Length=131251
Score = 140 bits (154), Expect = 9e-29
Identities = 248/355 (70%), Gaps = 10/355 (3%)
Strand=Plus/Plus
Query 40596 CCACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATC---GCCATTA 40652
||||| ||||| |||| | |||||||| ||| | |||||||| | | ||
Sbjct 107232 CCACCTGCTTTGATCCAAACATCAAATTGATCACTGGCAGCGTGATAATCAGAGGCGTTC 107291
Query 40653 TTAAGAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGT 40712
|| || ||| | |||||||||||||||||||||||| |||||||| ||| ||| |
Sbjct 107292 --AATAATTTTAA-TAAAGTTGAATTTTTAAAAGCACCAATACCAATGTTATAGCTCAAT 107348
Query 40713 GATACTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACA 40772
|| || | || ||||| ||||||||| | | || || || |||| || |||| |
Sbjct 107349 GAAACCAACGCATCAAACTGATTTTGATTTAACGGCACATTTACAGCAGCAGTTACTGCT 107408
Query 40773 TTTTCAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTA 40832
| ||||| | | |||| || | ||| |||||||||||||| ||||| |||
Sbjct 107409 TGCTCAAAACGTCTAAGGTCATATTGCATATAGTTTTTTGCTTGTTCAATGGTACAAGTA 107468
Query 40833 TCGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCAT 40892
|| || | || ||| | | |||| ||||| | ||||| || |||||||| ||
Sbjct 107469 TCACCATACTGAACAGCTTTTCCATGCGGGTAAATCGTTGTTCCATAACCGATGGTACAC 107528
Query 40893 ACGCCAACACCATCATCATATGCAGTTAA--TCTAGTTCCTTCAAAAGTAGAAAT 40945
|| ||||||||||||||||| || |||| |||| ||| |||||| | ||||
Sbjct 107529 ACACCAACACCATCATCATAAGC-TTTAAGCTCTA-ATCCCTCAAAACCACAAAT 107581
>seq8225
Length=74308
Score = 138 bits (152), Expect = 3e-28
Identities = 293/431 (68%), Gaps = 10/431 (2%)
Strand=Plus/Minus
Query 40544 AAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACCACCAG 40602
|||||| || | ||||||| || || ||||||| || | | || || |||||||
Sbjct 431 AAATAA-CTCCATTTCAGCTTTGCGACGTTTAACTAGTCCAGCCAAGACACGCCCACCAG 373
Query 40603 CTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAGAAGTT 40662
|||| ||||| || |||| | | |||||||||| ||| || ||| || ||
Sbjct 372 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 313
Query 40663 TGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATACTAGAG 40722
| || | |||||| || ||| | ||| || | ||| || || | ||| ||| ||
Sbjct 312 TAAGCAGAGTTGATTTGCTAAGATTGCCTTCACCCAAGTTATAAGTGAATGAAGCTAAAG 253
Query 40723 CGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTCAAACT 40782
| || ||||| |||||| |||| || ||||| || || ||| | | | ||||||||
Sbjct 252 CATCGAATTGGTTTTGATTAAGAGGTACTTTCACCAATCGATTGATAGCGTTTTCAAATA 193
Query 40783 TAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTATCGCCT 40838
|| ||||||| | |||| || || |||||| |||| || ||| |||||||
Sbjct 192 CAACCAAATCAT-TACGAAGATATTGTTCTGCTTGAGATTCA---GTGCATACATCGCCT 137
Query 40839 TTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGCCA 40898
|| ||||| | |||||| ||||| |||| || | || |||||||| || |||
Sbjct 136 TTTTTAACACGTACACCATTCGGGTATTTAATTGTGCCAAATCCAATGGTCCAAACACCA 77
Query 40899 ACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAAAGTAGAAATTAGATTGATGCCA 40958
|| ||||| ||||| || |||| | | |||||||| ||||||||||| ||
Sbjct 76 ACGCCATCGTCATAAGCTTTTAAACGTTTACCTTCAAAGCCTTTGATTAGATTGATTCCT 17
Query 40959 GTGTCACTTGT 40969
| || ||||||
Sbjct 16 GAGTTACTTGT 6
>seq9034
Length=15118
Score = 123 bits (136), Expect = 7e-24
Identities = 273/403 (68%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 40539 TTTAGAAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 40597
||||||||| |||| | ||||||| || || || || | || | | ||| |||||
Sbjct 9891 TTTAGAAAT-AACTCCATTTCAGCTTTGCGACGTTTCACCAGTCCAGCCAAAACACGACC 9949
Query 40598 ACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAG 40657
|||||| || |||||| ||| |||| | |||||||||| || || ||| ||
Sbjct 9950 ACCAGCCTTATTCCACTTTGGAAATTCGGCAGCAGCACCTTTGTAGTCTTTGGCATTGAG 10009
Query 40658 AAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATAC 40717
||| || | |||||| || ||| | ||| ||| | ||||||||| | ||| |
Sbjct 10010 CTTTTTAAGCAGAGTTGATTTACTAAGATTGCCTTCGCCCAAGTTGTAGGTAAATGAGGC 10069
Query 40718 TAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTC 40777
|| ||| || ||||| ||||| | || ||||| || || | ||| | | |||||||
Sbjct 10070 TAAAGCATCGAATTGGTTTTGGTTGAGCGGAACCTTCACCAAGCGATTGATAGCATTTTC 10129
Query 40778 AAACTTAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTAT 40833
||| || || |||| | |||| || || |||||| |||| || |||||||
Sbjct 10130 AAATACAACTAGGTCAT-TACGAAGATATTCTTCTGCTTGAGATTCA---GTGCATGTAT 10185
Query 40834 CGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATA 40893
| ||||| || || ||| || ||||| | |||| || | || |||||||| |
Sbjct 10186 CACCTTTTTTTACACGCACACCGTTAGGGTATTTGATTGTGCCAAATCCAATGGTCCAAA 10245
Query 40894 CGCCAACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAA 40936
||| |||||||| ||||| || | || | | ||||||||
Sbjct 10246 TGCCCACACCATCGTCATAAGCTTTCAAGCGTTTACCTTCAAA 10288
>seq8226
Length=5263
Score = 122 bits (134), Expect = 2e-23
Identities = 296/442 (67%), Gaps = 10/442 (2%)
Strand=Plus/Minus
Query 40539 TTTAGAAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 40597
|||| |||||| || | ||||||| || || || || | ||| | | || |||||
Sbjct 1565 TTTAAAAATAA-CTCCATTTCAGCTTTGCGACGTTTTACCAGACCAGCCAAGACGCGACC 1507
Query 40598 ACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAG 40657
||||||||| ||||| || |||| | | |||||||||| ||| || ||| ||
Sbjct 1506 ACCAGCTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAG 1447
Query 40658 AAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATAC 40717
||| || | |||||| || ||| | ||| || | ||| || || | ||| |
Sbjct 1446 CTTTTTAAGCAGAGTTGATTTGCTAAGATTGCCTTCACCCAAGTTATAAGTGAATGAAGC 1387
Query 40718 TAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTC 40777
|| ||| || ||||| |||||| | ||||| ||||| || | ||| | | | |||||
Sbjct 1386 TAAAGCATCGAATTGGTTTTGATTGAGTGGCACTTTCACCAAACGATTGATAGCGTTTTC 1327
Query 40778 AAACTTAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTAT 40833
||| | |||||||| | |||| || || |||||| |||| || |||||||
Sbjct 1326 AAATACTACTAAATCAT-TGCGAAGATATTGTTCTGCTTGAGATTCA---GTGCATGTAT 1271
Query 40834 CGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATA 40893
| ||||| || || |||||| || || |||| || | || |||||||| |
Sbjct 1270 CCCCTTTTTTGACACGCACACCATTCGGATATTTAATTGTGCCAAATCCAATGGTCCAAA 1211
Query 40894 CGCCAACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAAAGTAGAAATTAGATTGA 40953
||| |||||||| ||||| || | || | | || || ||| ||||||||||
Sbjct 1210 TGCCCACACCATCGTCATAGGCTTTCAAGCGTTTACCCTCGAAACCTTTGATTAGATTGA 1151
Query 40954 TGCCAGTGTCACTTGTGGTCAT 40975
| || | || |||||| ||||
Sbjct 1150 TTCCTGAGTTACTTGTTTTCAT 1129
>seq10131
Length=28935
Score = 86.0 bits (94), Expect = 2e-12
Identities = 164/242 (68%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 30226 TCAGTTGCTAATCTAACTGTTCCAACCTCACCATCACGCGCTTTAGCCACAATTATTTCG 30285
|| ||||||||| | ||||||||| || | ||| |||||| | | ||| |||||
Sbjct 8302 TCGGTTGCTAATTTCACTGTTCCAGTTGACCCGTTACGTGCTTTACCAATAATGATTTCA 8243
Query 30286 GCGATACCCTGATCTTTTGAGTTTTTATCATAATACTCATCACGATATATAAACATGATC 30345
|| | || ||||| || | || | ||| ||| ||||| || |||||||||||
Sbjct 8242 GCCGTTCCAGCCTCTTTAGATTCCTTGTTGTAAACCTCGTCACGGTAAATAAACATGATG 8183
Query 30346 ACATCTGCGTCCTCTTCAATAGATCCCGACTCACGAATGTCAGACATTAGAGGTCGTCTA 30405
| |||||||||| || | | || ||||| | |||| ||| ||| ||| ||
Sbjct 8182 ATGTCTGCGTCCTGCTCTAAATCACCTGACTCTTTTAAATCAGCGTTTACAGGGCGTTTA 8123
Query 30406 TCTTTTCTAGATTCTAAGCTTCGGCTTAATTGCGCTAAACAAAAAACAGGACAATCAAAT 30465
| | ||| ||| | | ||||| | | ||| |||||| ||| || ||||| |||||
Sbjct 8122 TTTGGTCTGTTTTCAAGGTTTCGGTTGAGTTGAGCTAAAGCAAATACTGGACACTCAAAA 8063
Query 30466 TC 30467
||
Sbjct 8062 TC 8061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143359958980464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |