Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028855.1 Length=44846 Score E Sequences producing significant alignments: (Bits) Value seq6169 174 5e-39 seq8151 140 9e-29 seq8225 138 3e-28 seq9034 123 7e-24 seq8226 122 2e-23 seq10131 86.0 2e-12 >seq6169 Length=202695 Score = 174 bits (192), Expect = 5e-39 Identities = 269/379 (71%), Gaps = 5/379 (1%) Strand=Plus/Minus Query 40538 CTTTAGAAATAAACTTCTTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 40597 |||| |||||| | | ||| |||||| || || || | |||| | ||| || Sbjct 3268 CTTTTCAAATAATTTACGTTCTTTAGCACGACGGTTCACAAGCCCTTGCATAACCTTGCC 3209 Query 40598 ACCAGCTTTTTTCCA-CGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAA 40656 ||| |||| ||||| || | |||||| | ||||| |||| |||||| | ||| | Sbjct 3208 ACCTCCTTTGTTCCATCGATCA-AATTGAGCTGCAGCGCCTTTATAATCTTTAGCATTTA 3150 Query 40657 GAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATA 40716 |||||||| ||||| | |||||| ||||| | |||||||||||| |||| ||||| Sbjct 3149 ACTTTTTGAGTAGTGTTGAGTCTTTAAATGCACCAGTGCCAATGTTGTAAGTCAATGATA 3090 Query 40717 CTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTT 40776 | | ||| || || |||||||| | | |||||||||||| || ||||||| || || Sbjct 3089 CCAAAGCATCGAACTGATTTTGGTTTAATGGAACTTTAACCGAAGTATTTACAGCAGATT 3030 Query 40777 CAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTATCGC 40836 |||| || ||||||| || | ||||| || |||||||||| || || ||||| | Sbjct 3029 CAAATTTCTTTAAATCTTGAGCCATGTAGGACTTAGCTTGTTCAGCAGTGCAAGTATCAC 2970 Query 40837 CTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGC 40896 ||||||||||| |||||| | | | ||||| || || || ||||| || | Sbjct 2969 CTTTCTTAACTGCGACACCATT--AATTG-CAGTTGTGCCATAACCAATAGTCCAAACAC 2913 Query 40897 CAACACCATCATCATATGC 40915 | |||||||| ||||| || Sbjct 2912 CTACACCATCGTCATACGC 2894 >seq8151 Length=131251 Score = 140 bits (154), Expect = 9e-29 Identities = 248/355 (70%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 40596 CCACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATC---GCCATTA 40652 ||||| ||||| |||| | |||||||| ||| | |||||||| | | || Sbjct 107232 CCACCTGCTTTGATCCAAACATCAAATTGATCACTGGCAGCGTGATAATCAGAGGCGTTC 107291 Query 40653 TTAAGAAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGT 40712 || || ||| | |||||||||||||||||||||||| |||||||| ||| ||| | Sbjct 107292 --AATAATTTTAA-TAAAGTTGAATTTTTAAAAGCACCAATACCAATGTTATAGCTCAAT 107348 Query 40713 GATACTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACA 40772 || || | || ||||| ||||||||| | | || || || |||| || |||| | Sbjct 107349 GAAACCAACGCATCAAACTGATTTTGATTTAACGGCACATTTACAGCAGCAGTTACTGCT 107408 Query 40773 TTTTCAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCTTGTTCAGATGTACATGTA 40832 | ||||| | | |||| || | ||| |||||||||||||| ||||| ||| Sbjct 107409 TGCTCAAAACGTCTAAGGTCATATTGCATATAGTTTTTTGCTTGTTCAATGGTACAAGTA 107468 Query 40833 TCGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCAT 40892 || || | || ||| | | |||| ||||| | ||||| || |||||||| || Sbjct 107469 TCACCATACTGAACAGCTTTTCCATGCGGGTAAATCGTTGTTCCATAACCGATGGTACAC 107528 Query 40893 ACGCCAACACCATCATCATATGCAGTTAA--TCTAGTTCCTTCAAAAGTAGAAAT 40945 || ||||||||||||||||| || |||| |||| ||| |||||| | |||| Sbjct 107529 ACACCAACACCATCATCATAAGC-TTTAAGCTCTA-ATCCCTCAAAACCACAAAT 107581 >seq8225 Length=74308 Score = 138 bits (152), Expect = 3e-28 Identities = 293/431 (68%), Gaps = 10/431 (2%) Strand=Plus/Minus Query 40544 AAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACCACCAG 40602 |||||| || | ||||||| || || ||||||| || | | || || ||||||| Sbjct 431 AAATAA-CTCCATTTCAGCTTTGCGACGTTTAACTAGTCCAGCCAAGACACGCCCACCAG 373 Query 40603 CTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAGAAGTT 40662 |||| ||||| || |||| | | |||||||||| ||| || ||| || || Sbjct 372 CTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAGCTTTT 313 Query 40663 TGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATACTAGAG 40722 | || | |||||| || ||| | ||| || | ||| || || | ||| ||| || Sbjct 312 TAAGCAGAGTTGATTTGCTAAGATTGCCTTCACCCAAGTTATAAGTGAATGAAGCTAAAG 253 Query 40723 CGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTCAAACT 40782 | || ||||| |||||| |||| || ||||| || || ||| | | | |||||||| Sbjct 252 CATCGAATTGGTTTTGATTAAGAGGTACTTTCACCAATCGATTGATAGCGTTTTCAAATA 193 Query 40783 TAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTATCGCCT 40838 || ||||||| | |||| || || |||||| |||| || ||| ||||||| Sbjct 192 CAACCAAATCAT-TACGAAGATATTGTTCTGCTTGAGATTCA---GTGCATACATCGCCT 137 Query 40839 TTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATACGCCA 40898 || ||||| | |||||| ||||| |||| || | || |||||||| || ||| Sbjct 136 TTTTTAACACGTACACCATTCGGGTATTTAATTGTGCCAAATCCAATGGTCCAAACACCA 77 Query 40899 ACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAAAGTAGAAATTAGATTGATGCCA 40958 || ||||| ||||| || |||| | | |||||||| ||||||||||| || Sbjct 76 ACGCCATCGTCATAAGCTTTTAAACGTTTACCTTCAAAGCCTTTGATTAGATTGATTCCT 17 Query 40959 GTGTCACTTGT 40969 | || |||||| Sbjct 16 GAGTTACTTGT 6 >seq9034 Length=15118 Score = 123 bits (136), Expect = 7e-24 Identities = 273/403 (68%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 40539 TTTAGAAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 40597 ||||||||| |||| | ||||||| || || || || | || | | ||| ||||| Sbjct 9891 TTTAGAAAT-AACTCCATTTCAGCTTTGCGACGTTTCACCAGTCCAGCCAAAACACGACC 9949 Query 40598 ACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAG 40657 |||||| || |||||| ||| |||| | |||||||||| || || ||| || Sbjct 9950 ACCAGCCTTATTCCACTTTGGAAATTCGGCAGCAGCACCTTTGTAGTCTTTGGCATTGAG 10009 Query 40658 AAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATAC 40717 ||| || | |||||| || ||| | ||| ||| | ||||||||| | ||| | Sbjct 10010 CTTTTTAAGCAGAGTTGATTTACTAAGATTGCCTTCGCCCAAGTTGTAGGTAAATGAGGC 10069 Query 40718 TAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTC 40777 || ||| || ||||| ||||| | || ||||| || || | ||| | | ||||||| Sbjct 10070 TAAAGCATCGAATTGGTTTTGGTTGAGCGGAACCTTCACCAAGCGATTGATAGCATTTTC 10129 Query 40778 AAACTTAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTAT 40833 ||| || || |||| | |||| || || |||||| |||| || ||||||| Sbjct 10130 AAATACAACTAGGTCAT-TACGAAGATATTCTTCTGCTTGAGATTCA---GTGCATGTAT 10185 Query 40834 CGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATA 40893 | ||||| || || ||| || ||||| | |||| || | || |||||||| | Sbjct 10186 CACCTTTTTTTACACGCACACCGTTAGGGTATTTGATTGTGCCAAATCCAATGGTCCAAA 10245 Query 40894 CGCCAACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAA 40936 ||| |||||||| ||||| || | || | | |||||||| Sbjct 10246 TGCCCACACCATCGTCATAAGCTTTCAAGCGTTTACCTTCAAA 10288 >seq8226 Length=5263 Score = 122 bits (134), Expect = 2e-23 Identities = 296/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 40539 TTTAGAAATAAACTTC-TTTCAGCAGCACGGCGCTTAACTAAACCTTCAAGAACTCGACC 40597 |||| |||||| || | ||||||| || || || || | ||| | | || ||||| Sbjct 1565 TTTAAAAATAA-CTCCATTTCAGCTTTGCGACGTTTTACCAGACCAGCCAAGACGCGACC 1507 Query 40598 ACCAGCTTTTTTCCACGCTGGGAATTGATCGGCAGCACCTTGATAATCGCCATTATTAAG 40657 ||||||||| ||||| || |||| | | |||||||||| ||| || ||| || Sbjct 1506 ACCAGCTTTGTTCCATTTAGGAAATTCAGCTGCAGCACCTTTATAGTCTTTGGCATTTAG 1447 Query 40658 AAGTTTGAGTAAAGTTGAATTTTTAAAAGCACCTGAGCCAATGTTGTAGGTCAGTGATAC 40717 ||| || | |||||| || ||| | ||| || | ||| || || | ||| | Sbjct 1446 CTTTTTAAGCAGAGTTGATTTGCTAAGATTGCCTTCACCCAAGTTATAAGTGAATGAAGC 1387 Query 40718 TAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTAACAGATTCATTTACAACATTTTC 40777 || ||| || ||||| |||||| | ||||| ||||| || | ||| | | | ||||| Sbjct 1386 TAAAGCATCGAATTGGTTTTGATTGAGTGGCACTTTCACCAAACGATTGATAGCGTTTTC 1327 Query 40778 AAACTTAATTAAATCATGTTTGAAG-TAGGTTTTTGCTTG---TTCAGATGTACATGTAT 40833 ||| | |||||||| | |||| || || |||||| |||| || ||||||| Sbjct 1326 AAATACTACTAAATCAT-TGCGAAGATATTGTTCTGCTTGAGATTCA---GTGCATGTAT 1271 Query 40834 CGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTACCTATGCCGATGGTCCATA 40893 | ||||| || || |||||| || || |||| || | || |||||||| | Sbjct 1270 CCCCTTTTTTGACACGCACACCATTCGGATATTTAATTGTGCCAAATCCAATGGTCCAAA 1211 Query 40894 CGCCAACACCATCATCATATGCAGTTAATCTAGTTCCTTCAAAAGTAGAAATTAGATTGA 40953 ||| |||||||| ||||| || | || | | || || ||| |||||||||| Sbjct 1210 TGCCCACACCATCGTCATAGGCTTTCAAGCGTTTACCCTCGAAACCTTTGATTAGATTGA 1151 Query 40954 TGCCAGTGTCACTTGTGGTCAT 40975 | || | || |||||| |||| Sbjct 1150 TTCCTGAGTTACTTGTTTTCAT 1129 >seq10131 Length=28935 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 30226 TCAGTTGCTAATCTAACTGTTCCAACCTCACCATCACGCGCTTTAGCCACAATTATTTCG 30285 || ||||||||| | ||||||||| || | ||| |||||| | | ||| ||||| Sbjct 8302 TCGGTTGCTAATTTCACTGTTCCAGTTGACCCGTTACGTGCTTTACCAATAATGATTTCA 8243 Query 30286 GCGATACCCTGATCTTTTGAGTTTTTATCATAATACTCATCACGATATATAAACATGATC 30345 || | || ||||| || | || | ||| ||| ||||| || ||||||||||| Sbjct 8242 GCCGTTCCAGCCTCTTTAGATTCCTTGTTGTAAACCTCGTCACGGTAAATAAACATGATG 8183 Query 30346 ACATCTGCGTCCTCTTCAATAGATCCCGACTCACGAATGTCAGACATTAGAGGTCGTCTA 30405 | |||||||||| || | | || ||||| | |||| ||| ||| ||| || Sbjct 8182 ATGTCTGCGTCCTGCTCTAAATCACCTGACTCTTTTAAATCAGCGTTTACAGGGCGTTTA 8123 Query 30406 TCTTTTCTAGATTCTAAGCTTCGGCTTAATTGCGCTAAACAAAAAACAGGACAATCAAAT 30465 | | ||| ||| | | ||||| | | ||| |||||| ||| || ||||| ||||| Sbjct 8122 TTTGGTCTGTTTTCAAGGTTTCGGTTGAGTTGAGCTAAAGCAAATACTGGACACTCAAAA 8063 Query 30466 TC 30467 || Sbjct 8062 TC 8061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143359958980464