Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028860.1 Length=52392 Score E Sequences producing significant alignments: (Bits) Value seq11622 93.3 1e-14 seq9910 82.4 3e-11 >seq11622 Length=276999 Score = 93.3 bits (102), Expect = 1e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4056 GGTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTC 4115 ||||||||| |||||||||||||| |||| |||||| ||| |||||||||||||||| Sbjct 89 GGTCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTC 148 Query 4116 CCTCCTGGCCTGCAAT 4131 ||||||| ||||| || Sbjct 149 CCTCCTGACCTGCCAT 164 >seq9910 Length=308115 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 4056 GGTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTC 4115 || || ||||||||||||||||| | |||| |||||| ||| |||||||||||||| | Sbjct 49798 GGCCAATAGCTCAATTGGTAGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGAC 49739 Query 4116 CCTCCTGGCCTGC 4128 |||| |||||||| Sbjct 49738 CCTCTTGGCCTGC 49726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167502840842332