Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq15007 89.7 3e-13 seq9470 87.8 9e-13 seq9835 84.2 1e-11 >seq15007 Length=612 Score = 89.7 bits (98), Expect = 3e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 64155 GGTCTTTAGCCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCACAG 64214 ||||||| | |||||||||||||||||||||| || |||| |||||| || |||| ||| Sbjct 241 GGTCTTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAG 300 Query 64215 GTTCAAGTCCTGTACGGGGTACCA 64238 |||| ||||| | |||| ||||| Sbjct 301 GTTCGAGTCCCGCACGGCCTACCA 324 >seq9470 Length=127963 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 66135 ACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAACTGAGCTAT 66194 |||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||| Sbjct 111693 ACAAGGATTCGAACCTTGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAACTGAGCTAT 111752 Query 66195 A 66195 | Sbjct 111753 A 111753 >seq9835 Length=4128 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 66126 GGTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAA 66185 |||| | ||| |||| |||||||| ||||||| ||||||| ||||| |||||||||||| Sbjct 1910 GGTGGGCGCACTAGGGCTCGAACCTAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAA 1851 Query 66186 CTGAGCTAT 66194 ||||||||| Sbjct 1850 CTGAGCTAT 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243897628870168