Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028878.1
Length=76271
Score E
Sequences producing significant alignments: (Bits) Value
seq15007 89.7 3e-13
seq9470 87.8 9e-13
seq9835 84.2 1e-11
>seq15007
Length=612
Score = 89.7 bits (98), Expect = 3e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 64155 GGTCTTTAGCCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCACAG 64214
||||||| | |||||||||||||||||||||| || |||| |||||| || |||| |||
Sbjct 241 GGTCTTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAG 300
Query 64215 GTTCAAGTCCTGTACGGGGTACCA 64238
|||| ||||| | |||| |||||
Sbjct 301 GTTCGAGTCCCGCACGGCCTACCA 324
>seq9470
Length=127963
Score = 87.8 bits (96), Expect = 9e-13
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 66135 ACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAACTGAGCTAT 66194
|||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 111693 ACAAGGATTCGAACCTTGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAACTGAGCTAT 111752
Query 66195 A 66195
|
Sbjct 111753 A 111753
>seq9835
Length=4128
Score = 84.2 bits (92), Expect = 1e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 66126 GGTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAA 66185
|||| | ||| |||| |||||||| ||||||| ||||||| ||||| ||||||||||||
Sbjct 1910 GGTGGGCGCACTAGGGCTCGAACCTAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAA 1851
Query 66186 CTGAGCTAT 66194
|||||||||
Sbjct 1850 CTGAGCTAT 1842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243897628870168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |