Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq6602 89.7 1e-13 seq6714 84.2 6e-12 seq11129 82.4 2e-11 seq10217 82.4 2e-11 >seq6602 Length=331455 Score = 89.7 bits (98), Expect = 1e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 31254 TGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACCG 31313 |||||| | || ||||||||||||| ||||||||| | ||||| |||||||||||||| Sbjct 160869 TGGCTGGGGCGCCAGGATTCGAACCTGGGAATGCCGGTACCAAAAACCGGTGCCTTACCG 160810 Query 31314 CTTGGCGACGGCGCAAAAG 31332 |||||||||| | ||| || Sbjct 160809 CTTGGCGACGCCCCAACAG 160791 >seq6714 Length=1758414 Score = 84.2 bits (92), Expect = 6e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 31252 TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTAC 31311 |||||||| | || ||||||||||||| ||||| ||| | ||||| ||| |||||||| Sbjct 926597 TTTGGCTGGGGCGCCAGGATTCGAACCTGGGAATGTCGGTACCAAAAACCGATGCCTTAC 926538 Query 31312 CGCTTGGCGACGGCGCAAAAGCTTATTGC 31340 |||||||||||| | ||| | | ||||| Sbjct 926537 CGCTTGGCGACGCCCCAAGATCCGATTGC 926509 >seq11129 Length=7293 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 31247 CCGTTTTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGC 31306 ||| | ||||| | | |||||||||||||||||||||||||| | ||||||| | ||||| Sbjct 7166 CCGCTATTGGCAGGGGCGGTAGGATTCGAACCTACGAATGCCAGGATCAAAACCTGGTGC 7225 Query 31307 CTT--ACCGCTTGGCGACG 31323 ||| || |||||||||| Sbjct 7226 CTTGGGCCTCTTGGCGACG 7244 >seq10217 Length=230632 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/72 (86%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 31252 TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTA- 31310 |||||||| | | ||||||||||||| || ||||||||||||||||||||||||||| Sbjct 14510 TTTGGCTGGGGAAGAAGGATTCGAACCTTCGCATGCCGGAATCAAAATCCGGTGCCTTAA 14451 Query 31311 -CCGCTTGGCGA 31321 | ||||||||| Sbjct 14450 CCAGCTTGGCGA 14439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138173686584746