Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028879.1
Length=43225
Score E
Sequences producing significant alignments: (Bits) Value
seq6602 89.7 1e-13
seq6714 84.2 6e-12
seq11129 82.4 2e-11
seq10217 82.4 2e-11
>seq6602
Length=331455
Score = 89.7 bits (98), Expect = 1e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 31254 TGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACCG 31313
|||||| | || ||||||||||||| ||||||||| | ||||| ||||||||||||||
Sbjct 160869 TGGCTGGGGCGCCAGGATTCGAACCTGGGAATGCCGGTACCAAAAACCGGTGCCTTACCG 160810
Query 31314 CTTGGCGACGGCGCAAAAG 31332
|||||||||| | ||| ||
Sbjct 160809 CTTGGCGACGCCCCAACAG 160791
>seq6714
Length=1758414
Score = 84.2 bits (92), Expect = 6e-12
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 31252 TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTAC 31311
|||||||| | || ||||||||||||| ||||| ||| | ||||| ||| ||||||||
Sbjct 926597 TTTGGCTGGGGCGCCAGGATTCGAACCTGGGAATGTCGGTACCAAAAACCGATGCCTTAC 926538
Query 31312 CGCTTGGCGACGGCGCAAAAGCTTATTGC 31340
|||||||||||| | ||| | | |||||
Sbjct 926537 CGCTTGGCGACGCCCCAAGATCCGATTGC 926509
>seq11129
Length=7293
Score = 82.4 bits (90), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 31247 CCGTTTTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGC 31306
||| | ||||| | | |||||||||||||||||||||||||| | ||||||| | |||||
Sbjct 7166 CCGCTATTGGCAGGGGCGGTAGGATTCGAACCTACGAATGCCAGGATCAAAACCTGGTGC 7225
Query 31307 CTT--ACCGCTTGGCGACG 31323
||| || ||||||||||
Sbjct 7226 CTTGGGCCTCTTGGCGACG 7244
>seq10217
Length=230632
Score = 82.4 bits (90), Expect = 2e-11
Identities = 62/72 (86%), Gaps = 2/72 (3%)
Strand=Plus/Minus
Query 31252 TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTA- 31310
|||||||| | | ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 14510 TTTGGCTGGGGAAGAAGGATTCGAACCTTCGCATGCCGGAATCAAAATCCGGTGCCTTAA 14451
Query 31311 -CCGCTTGGCGA 31321
| |||||||||
Sbjct 14450 CCAGCTTGGCGA 14439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138173686584746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |