Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq7272 147 5e-31 >seq7272 Length=98981 Score = 147 bits (162), Expect = 5e-31 Identities = 643/999 (64%), Gaps = 29/999 (3%) Strand=Plus/Plus Query 19842 AGCACCGCATCCGCGATATCCTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCC 19901 |||| |||| |||| || || ||||| |||||||| || || |||| || || || Sbjct 41084 AGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGGGGCAACGTGGTACTTCGGCC 41143 Query 19902 GCGAGGCGCTGCTGCGCGCCCTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTA 19961 ||||||| ||| | |||||||| || || | || ||||||||||| |||||||| Sbjct 41144 GCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCAGATTTTTCTTTCGGCCAGCC 41203 Query 19962 AAACGCAGGCGTATGTGTTCCGCGAATACATCATCGCCTTTGCCCGGCTGGTT---GACG 20018 ||||||| |||| ||||| | ||||||||||| |||||| | | | || Sbjct 41204 GTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGCGTTTGCCAAGGAGCATTGCGATA 41263 Query 20019 TTGACCTGACCGGTGACCCGATTGTCCTGGGCAATAACGGCGCAAAACTGATTTTTCTCG 20078 | || ||| || ||||| || |||||| ||||| ||||| | ||| ||| || | Sbjct 41264 TCGATTTGAAGGGCGACCCCATCGTCCTGAGCAAT---GGCGCCACGCTGTATTTCCTGG 41320 Query 20079 GCACCAACTCCAACACCGCACAGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCT 20138 |||| | | || |||||| ||| | ||||| | || || |||| || | || | Sbjct 41321 GCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTCTATTTCGATGAATTCTTTT 41380 Query 20139 GGATCCCGAATTTTCAGGTACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACC 20198 || || || || || ||| | |||||||| ||||||||| || | || Sbjct 41381 GGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGTATGGCCATCCACAAGCATT 41440 Query 20199 TGCGCTCGAC-CTATTTCTCCACCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGG 20257 |||| ||| || ||| ||||| || || ||| |||| | ||||| || | ||| Sbjct 41441 GGCGCAAGACGCTGTTT-TCCACGCCCAGCAGCCTGCAGCACCAGGCCTATGCGCTGTGG 41499 Query 20258 TCGGGTGAACTGTTCAACCGGGGACGCGCCAGCGCCGCCGAACGCGTGGAAATCGACGTC 20317 | |||| ||||| | ||||||| || ||| | || | ||| | Sbjct 41500 AGCGCCGAACGCATCAACAAGAAGCGCGCCA---AAAAGGACCGCATAGAGCTGGACCTG 41556 Query 20318 AGTCATAACGC-CCTTGCCGGAGGTCTTCTCTGTGCGGACGGCCAG---TGGCGGCAGAT 20373 || ||| ||| ||| || ||||| |||| | | || || | | || ||||||||||| Sbjct 41557 AGCCAT-TCGCACCTGGCTGGAGG-CTTCACCG-GC-GAGGACAAGATATGGCGGCAGAT 41612 Query 20374 TGTCACCATTGAGGACGCCCTGAAAGGCGGCTGCACGCTGTTCGACATTGAGCAGCTCAA 20433 |||||| | ||| || | | |||||||||| ||||||||| |||| | || Sbjct 41613 TGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGACCTTGACGAACTGCG 41672 Query 20434 ACGTGAAAACAGCGCCGACGATTTTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAA 20493 || | | ||| || | | |||||| ||||||| | ||||| || |||| Sbjct 41673 CTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTTGTCGATGACA- 41731 Query 20494 GGCGTCG--GTGTTCCCGTTCGAGGAGCTGCAACGTTGCATGGTCGACACGCT-GGAAGA 20550 | ||| || |||||| | |||| || ||| | |||| ||| ||| | Sbjct 41732 -CCTTCGCTGTTTTCCCGCTGTCCACGCTGATGCGCTGCCATGCGGACA-GCTGGGATGC 41789 Query 20551 ATGGGAAGACTATGCGCCGTTTGCCGCAAATCCGTTCGGCTCCCGCCCGGTATGGATTGG 20610 ||| || | ||| || | ||||| ||| || || |||||||| Sbjct 41790 GTGGAGCGATTTCAAGCCCTTCACGTTGCGGCCGTTTGGCCAAAAGCCCGTCTGGATTGG 41849 Query 20611 TTACGACCC--GTCACACCGTGGCGACAGCGCCGGATGCGTGGTACTGGCACCGCCGGTG 20668 || ||||| | || || |||||| || || || || ||||| ||||| | Sbjct 41850 CTATGACCCCAGCCATAC--GGGCGACTCGGCGGGCCTTGTAGTGCTGGCCCCGCCAGAA 41907 Query 20669 GTGGCCGGTGGCAAATTCAGAATACTTGAGCGTCACCAGTGGAAAGGCATGGACTTTGCC 20728 | | || ||||| ||| | || || ||||| |||| || || |||||||| Sbjct 41908 AAGCCGGGCGGCAAGTTCCGCATGCTGGAGCGCATGCAGTTCAAGGGAGCGGACTTTGAA 41967 Query 20729 ACCCAGGCGGAATCCATCCGCAAACTCACCGAAAAATATAACGTTGAATACATCGGGATT 20788 | ||||| ||| ||||||| | | || || ||||| ||||| | | ||||| | ||| Sbjct 41968 GCGCAGGCCGAAGTCATCCGCCAGATGACAGAGAAATACAACGTGGCACACATCTGCATT 42027 Query 20789 GATGCCACCGGCCTCGGTGTCGGCGTGTTCCAGCTCGTG 20827 ||| |||| || || || ||||| | ||| ||||| Sbjct 42028 GATTCCACAGGTCTGGGCCAGGGCGTCCTGCAGATCGTG 42066 Score = 125 bits (138), Expect = 1e-24 Identities = 343/521 (66%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 5583 TCGGTAATACGCTGGCGCAGGGTCAGGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAG 5642 ||||| || |||||||| | ||||| ||| || || ||||| || || ||||| ||| Sbjct 24798 TCGGTGATGCGCTGGCGGAATCCCAGGTCTTCCAGCGGCGGCACGGGCGTGTAGTCGTAG 24857 Query 5643 TCGATATACAGTTTTCCGGCCTTGAGGGTTTCCGCATCGTTGGATTCTTCGCTGAACCAG 5702 || | ||| || ||||||||||| | ||| | |||| || || |||||| Sbjct 24858 TCAAGCACCAGCTTGCCGGCCTTGAGCGCTTCTGTGGTGTTGACCTCGGCGTCAAACCAG 24917 Query 5703 CAGGTCGCATCCACGATATAGCCGTTTGTTTTCAGCTCACGGAATTTGGCATTGATGCCG 5762 | | || | ||| ||||| | || || || ||||| |||||||||||||| Sbjct 24918 GCGCGGCCGTCGAGGATGTAGCCCAGGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCT 24977 Query 5763 TCAACGATGTCGCGAATCAGCGTTGCGGTG-ATGGGCTTGTCCACCGCCCACATATGCGC 5821 || |||||||| | || | || |||| ||||||||||| || | ||| | Sbjct 24978 TCCACGATGTCTTTCACCA-TGCTGGGGTGCATGGGCTTGTCGACAAAGGCGAAATGACC 25036 Query 5822 CTCAGCCATCGTGTCGGCCAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGGAACAG 5881 ||| ||||| ||||||||||||||||| || ||||| | | || || ||||||| Sbjct 25037 CTCTGCCATGGTGTCGGCCAGCACCTGGGCAGTGCGCACGCTGGACTCGAATCGGAACAG 25096 Query 5882 CGGGTCATCAGAGCAGGTACGGTTACCCCAGAATCGGAAACCGTCGCGGCGAATCAGCGT 5941 ||| |||||| || |||||||| || | || | | | || ||||| Sbjct 25097 TTCGTCGGTGCTGCAGGTGCGCGATCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGT 25156 Query 5942 AGTGACGCCTGACTCGTTAAGCAGGTCAGCATCGGTGCCGGACTCCTGCAAATCCCAGAA 6001 |||||| ||| || ||||||| || || || | || |||| | | || Sbjct 25157 GGTGACGTTGCCCTCATTGAGCAGGTTTGCGTCCGTCTCCGAGCTTTGCAGGT--CGAAA 25214 Query 6002 TACAGATGC--GCTGATGCCGGTAACACCGTTTACCCCGACGTTGGACAGCGTTTTATGC 6059 | || | | ||||||||| || |||| | ||||| ||||| || || ||| Sbjct 25215 TGCACGTCCTTGCTGATGCCCACCGGGCCATTTAGCGGCACGTTTGACAGGGTCTTGTGC 25274 Query 6060 CAGCCCTGCTCCTGGTCGATTTTAGCGCGCAGACCCAGCGC 6100 || || |||||| |||||| |||||||| |||| ||| Sbjct 25275 CAACCTTGCTCCACGTCGATGCGGGCGCGCAGCCCCATCGC 25315 Score = 95.1 bits (104), Expect = 3e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 21635 AGCCGGATATCAATCAGGAGCTGTACGGCCTGCCGGAATATCTCAGCGCCCTTAACTCTG 21694 |||| ||| | | ||||| | || || |||||| | || || ||| || | || | Sbjct 42859 AGCCCGATGTGCACCAGGAAATCTATGGACTGCCGCAGTACCTGGCCGCGCTGCAGTCCG 42918 Query 21695 CCTGGCTGAATGAGTCGGCCACGCTGTTCCGCCGCAAGTATTACGAAAACGGCGCTCATG 21754 ||||||| |||||||||||||||||||| || ||| ||||||| | || || |||| Sbjct 42919 CCTGGCTCAATGAGTCGGCCACGCTGTTTCGGCGCCGGTATTACAACAATGGGAGCCATG 42978 Query 21755 CCGGATACATCATGTATGTCACCGATGCCG 21784 ||||||||||| | ||| | | |||| ||| Sbjct 42979 CCGGATACATCCTCTATCTGAGCGATCCCG 43008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104419723737846