Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028896.1
Length=32675
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 147 5e-31
>seq7272
Length=98981
Score = 147 bits (162), Expect = 5e-31
Identities = 643/999 (64%), Gaps = 29/999 (3%)
Strand=Plus/Plus
Query 19842 AGCACCGCATCCGCGATATCCTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCC 19901
|||| |||| |||| || || ||||| |||||||| || || |||| || || ||
Sbjct 41084 AGCAGCGCACGCGCGCCATTCTCAAATCGCGCCAGATCGGGGCAACGTGGTACTTCGGCC 41143
Query 19902 GCGAGGCGCTGCTGCGCGCCCTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTA 19961
||||||| ||| | |||||||| || || | || ||||||||||| ||||||||
Sbjct 41144 GCGAGGCCCTGATTGATGCCCTGAAGACGGGCCGCAATCAGATTTTTCTTTCGGCCAGCC 41203
Query 19962 AAACGCAGGCGTATGTGTTCCGCGAATACATCATCGCCTTTGCCCGGCTGGTT---GACG 20018
||||||| |||| ||||| | ||||||||||| |||||| | | | ||
Sbjct 41204 GTGCGCAGGCCCATGTTTTCCGGCAGTACATCATCGCGTTTGCCAAGGAGCATTGCGATA 41263
Query 20019 TTGACCTGACCGGTGACCCGATTGTCCTGGGCAATAACGGCGCAAAACTGATTTTTCTCG 20078
| || ||| || ||||| || |||||| ||||| ||||| | ||| ||| || |
Sbjct 41264 TCGATTTGAAGGGCGACCCCATCGTCCTGAGCAAT---GGCGCCACGCTGTATTTCCTGG 41320
Query 20079 GCACCAACTCCAACACCGCACAGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCT 20138
|||| | | || |||||| ||| | ||||| | || || |||| || | || |
Sbjct 41321 GCACGAGCGCCCGCACCGCGCAGTCGTACCACGGCAATCTCTATTTCGATGAATTCTTTT 41380
Query 20139 GGATCCCGAATTTTCAGGTACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACC 20198
|| || || || || ||| | |||||||| ||||||||| || | ||
Sbjct 41381 GGGTCAACAACTTCACGGAGCTGTGGAAGGTGGCCAGCGGTATGGCCATCCACAAGCATT 41440
Query 20199 TGCGCTCGAC-CTATTTCTCCACCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGG 20257
|||| ||| || ||| ||||| || || ||| |||| | ||||| || | |||
Sbjct 41441 GGCGCAAGACGCTGTTT-TCCACGCCCAGCAGCCTGCAGCACCAGGCCTATGCGCTGTGG 41499
Query 20258 TCGGGTGAACTGTTCAACCGGGGACGCGCCAGCGCCGCCGAACGCGTGGAAATCGACGTC 20317
| |||| ||||| | ||||||| || ||| | || | ||| |
Sbjct 41500 AGCGCCGAACGCATCAACAAGAAGCGCGCCA---AAAAGGACCGCATAGAGCTGGACCTG 41556
Query 20318 AGTCATAACGC-CCTTGCCGGAGGTCTTCTCTGTGCGGACGGCCAG---TGGCGGCAGAT 20373
|| ||| ||| ||| || ||||| |||| | | || || | | || |||||||||||
Sbjct 41557 AGCCAT-TCGCACCTGGCTGGAGG-CTTCACCG-GC-GAGGACAAGATATGGCGGCAGAT 41612
Query 20374 TGTCACCATTGAGGACGCCCTGAAAGGCGGCTGCACGCTGTTCGACATTGAGCAGCTCAA 20433
|||||| | ||| || | | |||||||||| ||||||||| |||| | ||
Sbjct 41613 TGTCACGGTGCTGGATGCGCAGCGCGGCGGCTGCAATCTGTTCGACCTTGACGAACTGCG 41672
Query 20434 ACGTGAAAACAGCGCCGACGATTTTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAA 20493
|| | | ||| || | | |||||| ||||||| | ||||| || ||||
Sbjct 41673 CTTCGAGTATTCGGACGAGGAATGGGACAACCTGCTCATGTGCGGGTTTGTCGATGACA- 41731
Query 20494 GGCGTCG--GTGTTCCCGTTCGAGGAGCTGCAACGTTGCATGGTCGACACGCT-GGAAGA 20550
| ||| || |||||| | |||| || ||| | |||| ||| ||| |
Sbjct 41732 -CCTTCGCTGTTTTCCCGCTGTCCACGCTGATGCGCTGCCATGCGGACA-GCTGGGATGC 41789
Query 20551 ATGGGAAGACTATGCGCCGTTTGCCGCAAATCCGTTCGGCTCCCGCCCGGTATGGATTGG 20610
||| || | ||| || | ||||| ||| || || ||||||||
Sbjct 41790 GTGGAGCGATTTCAAGCCCTTCACGTTGCGGCCGTTTGGCCAAAAGCCCGTCTGGATTGG 41849
Query 20611 TTACGACCC--GTCACACCGTGGCGACAGCGCCGGATGCGTGGTACTGGCACCGCCGGTG 20668
|| ||||| | || || |||||| || || || || ||||| ||||| |
Sbjct 41850 CTATGACCCCAGCCATAC--GGGCGACTCGGCGGGCCTTGTAGTGCTGGCCCCGCCAGAA 41907
Query 20669 GTGGCCGGTGGCAAATTCAGAATACTTGAGCGTCACCAGTGGAAAGGCATGGACTTTGCC 20728
| | || ||||| ||| | || || ||||| |||| || || ||||||||
Sbjct 41908 AAGCCGGGCGGCAAGTTCCGCATGCTGGAGCGCATGCAGTTCAAGGGAGCGGACTTTGAA 41967
Query 20729 ACCCAGGCGGAATCCATCCGCAAACTCACCGAAAAATATAACGTTGAATACATCGGGATT 20788
| ||||| ||| ||||||| | | || || ||||| ||||| | | ||||| | |||
Sbjct 41968 GCGCAGGCCGAAGTCATCCGCCAGATGACAGAGAAATACAACGTGGCACACATCTGCATT 42027
Query 20789 GATGCCACCGGCCTCGGTGTCGGCGTGTTCCAGCTCGTG 20827
||| |||| || || || ||||| | ||| |||||
Sbjct 42028 GATTCCACAGGTCTGGGCCAGGGCGTCCTGCAGATCGTG 42066
Score = 125 bits (138), Expect = 1e-24
Identities = 343/521 (66%), Gaps = 6/521 (1%)
Strand=Plus/Plus
Query 5583 TCGGTAATACGCTGGCGCAGGGTCAGGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAG 5642
||||| || |||||||| | ||||| ||| || || ||||| || || ||||| |||
Sbjct 24798 TCGGTGATGCGCTGGCGGAATCCCAGGTCTTCCAGCGGCGGCACGGGCGTGTAGTCGTAG 24857
Query 5643 TCGATATACAGTTTTCCGGCCTTGAGGGTTTCCGCATCGTTGGATTCTTCGCTGAACCAG 5702
|| | ||| || ||||||||||| | ||| | |||| || || ||||||
Sbjct 24858 TCAAGCACCAGCTTGCCGGCCTTGAGCGCTTCTGTGGTGTTGACCTCGGCGTCAAACCAG 24917
Query 5703 CAGGTCGCATCCACGATATAGCCGTTTGTTTTCAGCTCACGGAATTTGGCATTGATGCCG 5762
| | || | ||| ||||| | || || || ||||| ||||||||||||||
Sbjct 24918 GCGCGGCCGTCGAGGATGTAGCCCAGGGCCTTGAGTTCGCGGAACTTGGCATTGATGCCT 24977
Query 5763 TCAACGATGTCGCGAATCAGCGTTGCGGTG-ATGGGCTTGTCCACCGCCCACATATGCGC 5821
|| |||||||| | || | || |||| ||||||||||| || | ||| |
Sbjct 24978 TCCACGATGTCTTTCACCA-TGCTGGGGTGCATGGGCTTGTCGACAAAGGCGAAATGACC 25036
Query 5822 CTCAGCCATCGTGTCGGCCAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGGAACAG 5881
||| ||||| ||||||||||||||||| || ||||| | | || || |||||||
Sbjct 25037 CTCTGCCATGGTGTCGGCCAGCACCTGGGCAGTGCGCACGCTGGACTCGAATCGGAACAG 25096
Query 5882 CGGGTCATCAGAGCAGGTACGGTTACCCCAGAATCGGAAACCGTCGCGGCGAATCAGCGT 5941
||| |||||| || |||||||| || | || | | | || |||||
Sbjct 25097 TTCGTCGGTGCTGCAGGTGCGCGATCCCCAGAAGCGATAGCCCTGGTAGTTGATGAGCGT 25156
Query 5942 AGTGACGCCTGACTCGTTAAGCAGGTCAGCATCGGTGCCGGACTCCTGCAAATCCCAGAA 6001
|||||| ||| || ||||||| || || || | || |||| | | ||
Sbjct 25157 GGTGACGTTGCCCTCATTGAGCAGGTTTGCGTCCGTCTCCGAGCTTTGCAGGT--CGAAA 25214
Query 6002 TACAGATGC--GCTGATGCCGGTAACACCGTTTACCCCGACGTTGGACAGCGTTTTATGC 6059
| || | | ||||||||| || |||| | ||||| ||||| || || |||
Sbjct 25215 TGCACGTCCTTGCTGATGCCCACCGGGCCATTTAGCGGCACGTTTGACAGGGTCTTGTGC 25274
Query 6060 CAGCCCTGCTCCTGGTCGATTTTAGCGCGCAGACCCAGCGC 6100
|| || |||||| |||||| |||||||| |||| |||
Sbjct 25275 CAACCTTGCTCCACGTCGATGCGGGCGCGCAGCCCCATCGC 25315
Score = 95.1 bits (104), Expect = 3e-15
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 21635 AGCCGGATATCAATCAGGAGCTGTACGGCCTGCCGGAATATCTCAGCGCCCTTAACTCTG 21694
|||| ||| | | ||||| | || || |||||| | || || ||| || | || |
Sbjct 42859 AGCCCGATGTGCACCAGGAAATCTATGGACTGCCGCAGTACCTGGCCGCGCTGCAGTCCG 42918
Query 21695 CCTGGCTGAATGAGTCGGCCACGCTGTTCCGCCGCAAGTATTACGAAAACGGCGCTCATG 21754
||||||| |||||||||||||||||||| || ||| ||||||| | || || ||||
Sbjct 42919 CCTGGCTCAATGAGTCGGCCACGCTGTTTCGGCGCCGGTATTACAACAATGGGAGCCATG 42978
Query 21755 CCGGATACATCATGTATGTCACCGATGCCG 21784
||||||||||| | ||| | | |||| |||
Sbjct 42979 CCGGATACATCCTCTATCTGAGCGATCCCG 43008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104419723737846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |