Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028899.1 Length=222888 Score E Sequences producing significant alignments: (Bits) Value seq10652 107 3e-18 >seq10652 Length=111799 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 102572 CTCTGGAACCACATCGCCTGCACGTCGGACAACGACCTTATCGCCGATTCGCAGATCTTT 102631 ||| |||| |||||| ||||| | || |||| || ||||||| || | |||||| Sbjct 67966 CTCCGGAATCACATCCCCTGCCCTACGCACAATCACAGTATCGCCAATATAAATATCTTT 68025 Query 102632 ACGCCGGATCTCGTCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCTACGAA 102691 || | | ||| |||||||||||||| || ||||||| || || || ||||| || Sbjct 68026 GCGTCTTAGCTCATCTTCGTTATGCAGCGTAGCGTTGGTGACTGTTACTCCACCTACAAA 68085 Query 102692 AACGGGCTCTAAGCGGCCCACTGGAGTAATGGCCCCCGTTCTACCTACTTGAAC 102745 || || | |||||| |||| || |||||||| || |||||||| ||||| || Sbjct 68086 CACCGGTTTTAAGCGTGCCACCGGGGTAATGGCACCAGTTCTACCCACTTGCAC 68139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712979365278720