Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028910.1 Length=55617 Score E Sequences producing significant alignments: (Bits) Value seq12569 271 3e-68 seq6089 228 3e-55 >seq12569 Length=80069 Score = 271 bits (300), Expect = 3e-68 Identities = 559/827 (68%), Gaps = 17/827 (2%) Strand=Plus/Minus Query 42372 CAAGTTCAACGATCTGATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACCCATCC 42431 ||| |||||||| | |||||| | ||||| || ||||| ||| || ||||| Sbjct 63014 CAAATTCAACGACTTCATCCAGGCGATCCACCGCATCCAGCGATTCCTGCAGGGGCATCC 62955 Query 42432 CTGCACAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCATCCGCGA 42491 | | ||| ||||| || |||| | |||||| | ||| ||||| | | | || Sbjct 62954 CGTCGAGATCCACGTGATCTACGCCGAGAGCGAGCGCGCCGTGCTGCGGACCCTGCTGGA 62895 Query 42492 GAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCATGAGTACGG 42551 ||| ||||| || ||| || || | || |||| || ||||| | || ||||| Sbjct 62894 GAAGTGGGCGCAGCACGAGGAAATGGCGAAGACCATGAGCGCGATCATCCGCGAATACGG 62835 Query 42552 ACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGG-GTGC--GAGCGCAT 42608 || | || | || | ||| ||| ||| |||| || ||| || || || Sbjct 62834 CCTGTCCAACGCCGACATGGCGAAGGTGCTCACCCGCGCCATGGGCGTGAAGGATCGGAT 62775 Query 42609 CGAAGCATCCGGCGAGGGGTGGGTGTTCGTCAACAACGACTGCGTACTCGAAACCGAGA- 42667 ||| | ||||||| | || || ||| | ||| ||| ||||||| | || Sbjct 62774 CGAGGTGACCGGCGACAACTATCGCTTGGTGAACGAAGACACCGTCGTCGAAAC-GCGAC 62716 Query 42668 GAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGTATTCCGTTCTCCAACCACTACG 42727 | ||| | | || |||| ||||| |||||| || |||||||| | || |||| Sbjct 62715 GGATGCCGGCGGACAGCGTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACG 62656 Query 42728 AGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGC 42787 |||| |||||| |||| ||| ||||| ||||||||||||||||| ||||||||| | Sbjct 62655 AGTATTCGCCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGAC 62596 Query 42788 AGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCT 42847 ||||||||| ||| | ||| ||||||||||| | |||||||| || ||| | |||| Sbjct 62595 AGATGGACTTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCA 62536 Query 42848 GCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGT 42907 |||||| |||||||| ||| || || | |||||| |||| | | ||||| | Sbjct 62535 TCCACGTGAAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCT 62476 Query 42908 CCCCGTTCCACGCCGA------GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACC 42961 ||||||| | ||| |||| ||| |||||| |||||||| ||||| Sbjct 62475 ACCCGTTCGCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACC 62422 Query 42962 TCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGG 43021 ||||| | ||| | | ||||| || || || || ||||||||||| || ||||||| Sbjct 62421 TCGGCGAAAAGACCAACCTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGG 62362 Query 43022 GCTGGTCAGAGCAGTGCAAAGACGCCACCAAGATGGGGGTCGGCTCCCCGGAATACGTTC 43081 ||||| ||||||||||| |||| | ||||| | ||| |||||| | || | Sbjct 62361 GCTGGAGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGC 62302 Query 43082 TGCTGTTCCATAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACACCCGTCGCCA 43141 ||||||||| || |||| | ||| ||| || || ||||||||| || || | | Sbjct 62301 TGCTGTTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGA 62242 Query 43142 AATCCAAGGACGACTACACCCGGGCACGTTGGCAGGTGGACGCGCAC 43188 | |||||| ||||| |||||| || |||||| | ||||||||| Sbjct 62241 AGGACAAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 183 bits (202), Expect = 1e-41 Identities = 451/667 (68%), Gaps = 23/667 (3%) Strand=Plus/Minus Query 41299 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 41357 || ||||| | |||| | ||||||||| | | || ||| ||| | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014 Query 41358 GTTCGGCCTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 41414 ||||||||||| || | ||| | ||| ||||||| | ||| | || ||| || | Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958 Query 41415 GCATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 41474 | ||| || | || |||||||| || ||||| ||||||||| |||||| | Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900 Query 41475 CGACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGCGG 41534 |||||| ||||| ||| | ||||||| |||| || | || || | | || Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840 Query 41535 ---CGACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 41591 || || |||| || |||||||| |||| || || ||||| ||| | ||||| | Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC 63780 Query 41592 ACTGTT-CACGGCCGTCTCACTCGATGAGGCGAGCGTGCTGCG-GTCTTT--CGGGTCCA 41647 ||||| | ||| || || || || ||||| ||||| ||||| | ||| ||| |||| Sbjct 63779 -CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721 Query 41648 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCGTACCGGTACGTCGCCACCG 41707 |||||| | |||| | ||||||||| ||| | || || | ||||||||| | Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661 Query 41708 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGA 41767 |||||||||| || ||| | || |||||| || ||| ||| | || || |||| Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601 Query 41768 TGGACACCGGGGCGGCGCTCACGCGTTGGTTCCAACGGGAC-TCGACGAAGGCGAACAAC 41826 |||| |||| ||| || || | |||| || ||| ||| | | || || | Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGA-GCACGCCGACGCC 63542 Query 41827 CTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACG-TGGGCGGC 41885 |||||||| ||||||| ||||| | |||||||||||||||| || || | |||| Sbjct 63541 CTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCT 63483 Query 41886 GTTCGTGCAATCACCGGCCGACCTCGGTCACGACGCCACCGGCTATGACCTTCCGCCGCT 41945 |||||| || ||| ||| ||||| | || | |||||| ||||| ||||| || Sbjct 63482 GTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCT 63423 Query 41946 GGAGGTG 41952 | ||||| Sbjct 63422 GCAGGTG 63416 Score = 95.1 bits (104), Expect = 4e-15 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43460 AAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 43519 ||| ||| |||||||||||| ||||| ||||| ||||||||||||| | | || Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861 Query 43520 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 43579 | || ||||| |||||||||| ||||||||||| ||| |||||||| | || || Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801 Query 43580 TGAAACTTGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 43639 | || | || || |||| | | ||||||||| || | ||||| |||| | || Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741 Query 43640 TCAAG 43644 | ||| Sbjct 61740 TGAAG 61736 >seq6089 Length=13452 Score = 228 bits (252), Expect = 3e-55 Identities = 472/693 (68%), Gaps = 32/693 (5%) Strand=Plus/Minus Query 41299 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 41358 |||||| ||| ||||| || ||||| |||| || || | |||||||||||||| ||| Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714 Query 41359 TTCGGCCTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 41416 ||||||||||||||| | || ||||||||||||||| |||||| | | || ||| ||| Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656 Query 41417 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 41476 ||||| | | |||||||| |||||||| ||||| |||||| ||| | || Sbjct 4655 TGGGCGGCCGGCAG---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599 Query 41477 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCG------ 41530 |||| | ||||| ||| | || | ||| | ||| |||| | ||| || Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539 Query 41531 --GCGG------CGAC--GGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAA 41578 |||| ||| || | || | || ||||||||||| ||||||||| || | Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479 Query 41579 AGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGATGAGGCGAGCGTGCT---GCGGT 41635 || | |||| ||| | |||| |||| || || || || || | ||||| ||||| Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420 Query 41636 CTTT-CGGGTCCAAGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCGTACCGG 41694 || ||| ||||||||| || |||| | ||||||||||| ||| || | Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360 Query 41695 TACGTCGCCACCGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATCCACTACGCGGGC 41754 | |||||||| ||||||||||| |||||| || | |||||| | ||| || | | Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300 Query 41755 TATCTCGGGGTGATGGACACCGGGGCGGCGCTCACGCGTTGGTTCCAACGGGACT-CGAC 41813 | || | | | ||||| ||| ||| || || | ||| | ||| || ||| Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA- 4241 Query 41814 GAAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAA 41873 |||||| || | || ||| || | ||||| || ||| | || |||||||||||| |||| Sbjct 4240 GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAA 4181 Query 41874 CACGTGGGCGGCGTTCGTGCAATCACCGGCCGACCTCGGTCACGACGCCACCGGCTATGA 41933 | ||||| || ||||| || ||| ||| || ||| || | |||||||| Sbjct 4180 TAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGA 4121 Query 41934 CCTTCCGCCGCTGGAGGTGCTGTGGCATGAGGT 41966 ||| || |||||| |||| ||||||||||| Sbjct 4120 CCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088 Score = 156 bits (172), Expect = 2e-33 Identities = 303/443 (68%), Gaps = 12/443 (3%) Strand=Plus/Minus Query 42691 CTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 42750 |||||||||||||| | || || || ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 42751 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 42810 |||||||| |||||||| || ||||||| |||||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 42811 CTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTG 42870 ||||||||| || | ||| || ||| | || || || ||||| ||| ||| Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198 Query 42871 TTC-----GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTCCACGC-CGAG 42924 ||| |||| | || || ||| | | ||| | |||||||| || || Sbjct 3197 TTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCT 3141 Query 42925 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACC 42984 || ||| || ||| || ||||||| ||| || |||||| | || |||| ||| Sbjct 3140 GC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACC 3082 Query 42985 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGAC 43044 ||||| || || || || || || |||||||||||| | ||||||||||| || Sbjct 3081 GATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGAT 3022 Query 43045 GCCACCAAGATGGGGGTCGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACA 43104 |||| | ||||| |||||| || ||||| | || ||||||| || |||| ||| Sbjct 3021 GCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACC 2962 Query 43105 GACAGGTCGAAGGGATACGCCGA 43127 ||| || || || || ||||| Sbjct 2961 GACCGGAGCAACGGCTATGCCGA 2939 Score = 80.6 bits (88), Expect = 9e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 43464 GCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCC 43523 |||| | |||||||||| ||||| ||||| ||||| ||||| || || || Sbjct 2485 GCATCTATGCCCCCTGCCCTTCGATATCGTCGACCGCGCCATCACGAACTGGAGCAACCC 2426 Query 43524 TGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAA 43583 ||||| || | | || ||||||||||| ||| || ||||| |||| ||| |||| Sbjct 2425 GGGCGACCTGATCTATGATCCGTTCGGCGGCCTGATGACGGTGCCCCTGCGCGCTGTGAA 2366 Query 43584 ACTTGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTGTCA 43642 | ||| || || ||| | | | |||||| ||||||| ||| | | ||||| |||| Sbjct 2365 GCATGGCCGCCGGGGCGGCGCGGCCGAGCTTAATCCCGACTATTTCCGCGATGGCGTCA 2307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177820995361882