Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028910.1
Length=55617
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 271 3e-68
seq6089 228 3e-55
>seq12569
Length=80069
Score = 271 bits (300), Expect = 3e-68
Identities = 559/827 (68%), Gaps = 17/827 (2%)
Strand=Plus/Minus
Query 42372 CAAGTTCAACGATCTGATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACCCATCC 42431
||| |||||||| | |||||| | ||||| || ||||| ||| || |||||
Sbjct 63014 CAAATTCAACGACTTCATCCAGGCGATCCACCGCATCCAGCGATTCCTGCAGGGGCATCC 62955
Query 42432 CTGCACAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCATCCGCGA 42491
| | ||| ||||| || |||| | |||||| | ||| ||||| | | | ||
Sbjct 62954 CGTCGAGATCCACGTGATCTACGCCGAGAGCGAGCGCGCCGTGCTGCGGACCCTGCTGGA 62895
Query 42492 GAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCATGAGTACGG 42551
||| ||||| || ||| || || | || |||| || ||||| | || |||||
Sbjct 62894 GAAGTGGGCGCAGCACGAGGAAATGGCGAAGACCATGAGCGCGATCATCCGCGAATACGG 62835
Query 42552 ACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGG-GTGC--GAGCGCAT 42608
|| | || | || | ||| ||| ||| |||| || ||| || || ||
Sbjct 62834 CCTGTCCAACGCCGACATGGCGAAGGTGCTCACCCGCGCCATGGGCGTGAAGGATCGGAT 62775
Query 42609 CGAAGCATCCGGCGAGGGGTGGGTGTTCGTCAACAACGACTGCGTACTCGAAACCGAGA- 42667
||| | ||||||| | || || ||| | ||| ||| ||||||| | ||
Sbjct 62774 CGAGGTGACCGGCGACAACTATCGCTTGGTGAACGAAGACACCGTCGTCGAAAC-GCGAC 62716
Query 42668 GAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGTATTCCGTTCTCCAACCACTACG 42727
| ||| | | || |||| ||||| |||||| || |||||||| | || ||||
Sbjct 62715 GGATGCCGGCGGACAGCGTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACG 62656
Query 42728 AGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTTCTGGGCGC 42787
|||| |||||| |||| ||| ||||| ||||||||||||||||| ||||||||| |
Sbjct 62655 AGTATTCGCCGAACTACGCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGAC 62596
Query 42788 AGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCT 42847
||||||||| ||| | ||| ||||||||||| | |||||||| || ||| | ||||
Sbjct 62595 AGATGGACTTTCTCGCCCCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCA 62536
Query 42848 GCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGT 42907
|||||| |||||||| ||| || || | |||||| |||| | | ||||| |
Sbjct 62535 TCCACGTGAAGGACCGGATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCT 62476
Query 42908 CCCCGTTCCACGCCGA------GGCGATCTTCCACGGCCGCAAACACGGCTTCGACTACC 42961
||||||| | ||| |||| ||| |||||| |||||||| |||||
Sbjct 62475 ACCCGTTCGCGGACGACTGCCGGGCGTGCTT------CCGCAAGGCCGGCTTCGCCTACC 62422
Query 42962 TCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGG 43021
||||| | ||| | | ||||| || || || || ||||||||||| || |||||||
Sbjct 62421 TCGGCGAAAAGACCAACCTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGG 62362
Query 43022 GCTGGTCAGAGCAGTGCAAAGACGCCACCAAGATGGGGGTCGGCTCCCCGGAATACGTTC 43081
||||| ||||||||||| |||| | ||||| | ||| |||||| | || |
Sbjct 62361 GCTGGAGCGAGCAGTGCAAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGC 62302
Query 43082 TGCTGTTCCATAAACCGCAGACAGACAGGTCGAAGGGATACGCCGACACACCCGTCGCCA 43141
||||||||| || |||| | ||| ||| || || ||||||||| || || | |
Sbjct 62301 TGCTGTTCCGCAAGCCGCCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGA 62242
Query 43142 AATCCAAGGACGACTACACCCGGGCACGTTGGCAGGTGGACGCGCAC 43188
| |||||| ||||| |||||| || |||||| | |||||||||
Sbjct 62241 AGGACAAGGATCGCTACAGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 183 bits (202), Expect = 1e-41
Identities = 451/667 (68%), Gaps = 23/667 (3%)
Strand=Plus/Minus
Query 41299 CACCAGCGCGATCTGGTGCGTTGGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGC 41357
|| ||||| | |||| | ||||||||| | | || ||| ||| | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGC-CGCCCTGTTCGCCGC 64014
Query 41358 GTTCGGCCTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCG---CCTGTCGCTAGCCAA 41414
||||||||||| || | ||| | ||| ||||||| | ||| | || ||| || |
Sbjct 64013 CTTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTGCGCGGATCATG-CGCGAG---A 63958
Query 41415 GCATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCA 41474
| ||| || | || |||||||| || ||||| ||||||||| |||||| |
Sbjct 63957 TCTC--CGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCG 63900
Query 41475 CGACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCGGCGG 41534
|||||| ||||| ||| | ||||||| |||| || | || || | | ||
Sbjct 63899 GGACGCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGA 63840
Query 41535 ---CGACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC 41591
|| || |||| || |||||||| |||| || || ||||| ||| | ||||| |
Sbjct 63839 TCCCGGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC 63780
Query 41592 ACTGTT-CACGGCCGTCTCACTCGATGAGGCGAGCGTGCTGCG-GTCTTT--CGGGTCCA 41647
||||| | ||| || || || || ||||| ||||| ||||| | ||| ||| ||||
Sbjct 63779 -CTGTTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCA 63721
Query 41648 AGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCGTACCGGTACGTCGCCACCG 41707
|||||| | |||| | ||||||||| ||| | || || | ||||||||| |
Sbjct 63720 AGACCTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGG 63661
Query 41708 CCACGCCGTCACCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGA 41767
|||||||||| || ||| | || |||||| || ||| ||| | || || ||||
Sbjct 63660 CCACGCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGA 63601
Query 41768 TGGACACCGGGGCGGCGCTCACGCGTTGGTTCCAACGGGAC-TCGACGAAGGCGAACAAC 41826
|||| |||| ||| || || | |||| || ||| ||| | | || || |
Sbjct 63600 TGGATGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGA-GCACGCCGACGCC 63542
Query 41827 CTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAACACG-TGGGCGGC 41885
|||||||| ||||||| ||||| | |||||||||||||||| || || | ||||
Sbjct 63541 CTCACCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGG-TGCGCAAGCTGGGGTCT 63483
Query 41886 GTTCGTGCAATCACCGGCCGACCTCGGTCACGACGCCACCGGCTATGACCTTCCGCCGCT 41945
|||||| || ||| ||| ||||| | || | |||||| ||||| ||||| ||
Sbjct 63482 GTTCGTCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCT 63423
Query 41946 GGAGGTG 41952
| |||||
Sbjct 63422 GCAGGTG 63416
Score = 95.1 bits (104), Expect = 4e-15
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 43460 AAATGCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGA 43519
||| ||| |||||||||||| ||||| ||||| ||||||||||||| | | ||
Sbjct 61920 AAAAGCACCTGTGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCG 61861
Query 43520 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 43579
| || ||||| |||||||||| ||||||||||| ||| |||||||| | || ||
Sbjct 61860 AGCCGGGCGACGTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCA 61801
Query 43580 TGAAACTTGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTG 43639
| || | || || |||| | | ||||||||| || | ||||| |||| | ||
Sbjct 61800 TCAAGCACGGGCGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTG 61741
Query 43640 TCAAG 43644
| |||
Sbjct 61740 TGAAG 61736
>seq6089
Length=13452
Score = 228 bits (252), Expect = 3e-55
Identities = 472/693 (68%), Gaps = 32/693 (5%)
Strand=Plus/Minus
Query 41299 CACCAGCGCGATCTGGTGCGTTGGGCGGTCGCCGGGGGTAGGCGCGCGATCTTCGCGGCG 41358
|||||| ||| ||||| || ||||| |||| || || | |||||||||||||| |||
Sbjct 4773 CACCAGGCCGAGCTGGTCCGGTGGGCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCG 4714
Query 41359 TTCGGCCTGGGCAAGACCGTGATGCAGCTGGAGATCGTGCGCCTG--TCGCTAGCCAAGC 41416
||||||||||||||| | || ||||||||||||||| |||||| | | || ||| |||
Sbjct 4713 TTCGGCCTGGGCAAGTCGGTCATGCAGCTGGAGATCATGCGCCAGCTTGGC--GCCCAGC 4656
Query 41417 ATGGCGGTGGTAAAGGTCTGATCGTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACG 41476
||||| | | |||||||| |||||||| ||||| |||||| ||| | ||
Sbjct 4655 TGGGCGGCCGGCAG---CTGATCGTCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCG 4599
Query 41477 ACGCCCAAATGCTAGGCATCGAAACCCGGTTCGTTCGCCGTACAGACGAAGTCG------ 41530
|||| | ||||| ||| | || | ||| | ||| |||| | ||| ||
Sbjct 4598 ACGCGCTGATGCTGGGCCTGGATCCGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGC 4539
Query 41531 --GCGG------CGAC--GGAATCTAT--CTCACCAACTATGAGAGTGTCCGCGACGGAA 41578
|||| ||| || | || | || ||||||||||| ||||||||| || |
Sbjct 4538 ATGCGGATCGGCCGAGCGGGCAGCTGTACCTGACCAACTATGAATCTGTCCGCGAAGGCA 4479
Query 41579 AGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGATGAGGCGAGCGTGCT---GCGGT 41635
|| | |||| ||| | |||| |||| || || || || || | ||||| |||||
Sbjct 4478 AGATCGACCTGACGCATTTCAATGCCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGT 4420
Query 41636 CTTT-CGGGTCCAAGACCTACCAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCGTACCGG 41694
|| ||| ||||||||| || |||| | ||||||||||| ||| || |
Sbjct 4419 TTTGGCGGCACCAAGACCTTCCGCGAGTTCATGCGGCTGTTCGACGGCATGCAATATAAG 4360
Query 41695 TACGTCGCCACCGCCACGCCGTCACCGAACCGGTACAAGGAGCTGATCCACTACGCGGGC 41754
| |||||||| ||||||||||| |||||| || | |||||| | ||| || | |
Sbjct 4359 TTTGTCGCCACGGCCACGCCGTCGCCGAACGACTATATCGAGCTGCTGGCCTATGCCGCC 4300
Query 41755 TATCTCGGGGTGATGGACACCGGGGCGGCGCTCACGCGTTGGTTCCAACGGGACT-CGAC 41813
| || | | | ||||| ||| ||| || || | ||| | ||| || |||
Sbjct 4299 TTCCTGGAGATCATGGATGTCGGCCAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA- 4241
Query 41814 GAAGGCGAACAACCTCACCCTCTACCCGCATAAAGAACACGAGTTCTGGCTGTGGCTGAA 41873
|||||| || | || ||| || | ||||| || ||| | || |||||||||||| ||||
Sbjct 4240 GAAGGCCGACGAACTGACCATCCATCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAA 4181
Query 41874 CACGTGGGCGGCGTTCGTGCAATCACCGGCCGACCTCGGTCACGACGCCACCGGCTATGA 41933
| ||||| || ||||| || ||| ||| || ||| || | ||||||||
Sbjct 4180 TAGCTGGGCCGCATTCGTCCAGCGGCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGA 4121
Query 41934 CCTTCCGCCGCTGGAGGTGCTGTGGCATGAGGT 41966
||| || |||||| |||| |||||||||||
Sbjct 4120 CCTGCCCGAGCTGGACGTGCGCTGGCATGAGGT 4088
Score = 156 bits (172), Expect = 2e-33
Identities = 303/443 (68%), Gaps = 12/443 (3%)
Strand=Plus/Minus
Query 42691 CTGATTGTCACCAGTATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 42750
|||||||||||||| | || || || ||| || || || |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 42751 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 42810
|||||||| |||||||| || ||||||| |||||||||||||| || || || ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 42811 CTGCTGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTG 42870
||||||||| || | ||| || ||| | || || || ||||| ||| |||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGC--GTTG 3198
Query 42871 TTC-----GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTCCACGC-CGAG 42924
||| |||| | || || ||| | | ||| | |||||||| || ||
Sbjct 3197 TTCCGTCGGGCA---TGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCT 3141
Query 42925 GCGATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACC 42984
|| ||| || ||| || ||||||| ||| || |||||| | || |||| |||
Sbjct 3140 GC-ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACC 3082
Query 42985 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGAC 43044
||||| || || || || || || |||||||||||| | ||||||||||| ||
Sbjct 3081 GATGTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGAT 3022
Query 43045 GCCACCAAGATGGGGGTCGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACA 43104
|||| | ||||| |||||| || ||||| | || ||||||| || |||| |||
Sbjct 3021 GCCAGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACC 2962
Query 43105 GACAGGTCGAAGGGATACGCCGA 43127
||| || || || || |||||
Sbjct 2961 GACCGGAGCAACGGCTATGCCGA 2939
Score = 80.6 bits (88), Expect = 9e-11
Identities = 125/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 43464 GCATGTGTGCCCCCTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCC 43523
|||| | |||||||||| ||||| ||||| ||||| ||||| || || ||
Sbjct 2485 GCATCTATGCCCCCTGCCCTTCGATATCGTCGACCGCGCCATCACGAACTGGAGCAACCC 2426
Query 43524 TGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTCTGAA 43583
||||| || | | || ||||||||||| ||| || ||||| |||| ||| ||||
Sbjct 2425 GGGCGACCTGATCTATGATCCGTTCGGCGGCCTGATGACGGTGCCCCTGCGCGCTGTGAA 2366
Query 43584 ACTTGGTCGGCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGATGCTGTCA 43642
| ||| || || ||| | | | |||||| ||||||| ||| | | ||||| ||||
Sbjct 2365 GCATGGCCGCCGGGGCGGCGCGGCCGAGCTTAATCCCGACTATTTCCGCGATGGCGTCA 2307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 177820995361882
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