Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq12126 96.9 1e-15 >seq12126 Length=13531 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 53446 CATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAG 53505 |||||||||||| ||||||||| || ||| ||||| || || | |||| |||||| Sbjct 5617 CATCACAACTACGTGCAGAAGGAGACGCACCACGGCCAGGAACTGCTGGTGACGCGCAAG 5558 Query 53506 GGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGGCACCCGC 53565 || ||| || |||| | |||| | || ||| | |||||||||||||||||||| ||| Sbjct 5557 GGCGCGGTCAGCGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGCAGCATGGGCACGCGC 5498 Query 53566 TCGTATGTCGTCACCGGCAAGGGCAA 53591 || |||| ||||||||||| Sbjct 5497 AGCTACATCGTGCGTGGCAAGGGCAA 5472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188811029710612