Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028943.1
Length=29237
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 161 2e-35
>seq7272
Length=98981
Score = 161 bits (178), Expect = 2e-35
Identities = 641/995 (64%), Gaps = 23/995 (2%)
Strand=Plus/Minus
Query 8668 ACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCCGATGTATTCGACGTTG 8727
|||| ||| | ||||| || || || |||| |||||| | ||||| | | ||||||
Sbjct 42065 ACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTG 42006
Query 8728 TATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCAC 8787
||||| || || | | ||||||| ||| ||||| | |||||||| || || ||
Sbjct 42005 TATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAAC 41946
Query 8788 TGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCACG 8847
|| ||||| || || | ||| ||||| || | | | ||||| |||||||| ||
Sbjct 41945 TGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACA 41886
Query 8848 CATCCGGCACTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCAGACCGGGCGGGAGC 8905
|| || |||||| || || | ||||| || ||||||||||| || ||
Sbjct 41885 AGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGC 41828
Query 8906 CGAACGGATTCGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCATG 8964
| ||||| | | || ||| | || ||| | ||| ||| |||| | |
Sbjct 41827 CAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATGG 41769
Query 8965 CAGCGTTGCAGCTCCTCGAACGGGAACAC--CGACGCCTTGTCGTCAACAAATTCACACA 9022
||||| |||| | |||||| || ||| | |||| || ||||| | ||||
Sbjct 41768 CAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCACA 41711
Query 9023 TGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTCAATGTCGAACA 9082
||| |||||| | | || ||| | | ||| || | |||| ||||||||
Sbjct 41710 TGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACA 41651
Query 9083 GCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGACCGTCCG 9142
| ||||||| || | | || ||| | ||||||||||||||||| ||||
Sbjct 41650 GATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCT 41591
Query 9143 CACAGA-GAAGCCCACCGGCAAGAGCGTTATGACTGACGTCGATTTCCACGCGTTCGGCG 9201
| | | |||||| | | || | ||| ||| || | ||| | || | ||| ||
Sbjct 41590 CGCCGGTGAAGCCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTCCTTT 41532
Query 9202 GCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGCGCC 9261
||||||| | ||||| |||| | ||| | || ||||| | |||| |
Sbjct 41531 T---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGC 41475
Query 9262 AGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGACTCTGTGAGGCCATACCTGA 9320
|| || || ||||| ||| || ||| |||| || | || |||||||||
Sbjct 41474 AGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCT 41416
Query 9321 TGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAGAAAATCTCGTCGACGTACAGGTC 9380
|||||||| | ||| || || || | ||| || | || |||| || || |
Sbjct 41415 GGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATT 41356
Query 9381 GCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGCCGTT 9440
||||| | |||||||||| || | | ||||| || ||| ||| | |||||
Sbjct 41355 GCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCC--- 41299
Query 9441 ATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGCCGGGCAAAGGC 9497
||||| |||||| || ||||| || ||| || | || | | | |||||| ||
Sbjct 41298 ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAAACGC 41239
Query 9498 GATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTT 9557
||||||||| | ||||| |||| ||||||| |||||||| ||||||||||| ||
Sbjct 41238 GATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATT 41179
Query 9558 ATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAAT 9617
| || || |||||||| | ||| ||||||||| || || |||| || || ||
Sbjct 41178 GCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGAT 41119
Query 9618 CTGGCGGGATTTCAGGATATCGCGGATGCGGTGCT 9652
|||||| ||||| || || |||| |||| ||||
Sbjct 41118 CTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084
Score = 127 bits (140), Expect = 4e-25
Identities = 346/523 (66%), Gaps = 10/523 (2%)
Strand=Plus/Minus
Query 23139 GCGCTGGGACTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 23198
||| |||| ||||| ||| |||||| |||||| || ||||| || || ||||| |||
Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256
Query 23199 GTCGGGGTAAACGGTGTTACCGGCATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGT 23256
|| | |||| || ||||||||| | | || ||| | | |||| |
Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCG--ACCTGCAAAGCT 25198
Query 23257 CCGGCACCGATGCTGACCTGCTGAACGAGTCAGGCGTCACAACGCTGATTCGTCGTGACG 23316
| | || || || ||||||| || ||| |||||| ||||| || | |
Sbjct 25197 CGGAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGG 25138
Query 23317 GTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACT 23376
| | ||||||||||| || |||||| ||| ||||||| || || |
Sbjct 25137 GCTATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCA 25078
Query 23377 ACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTG- 23435
| ||||| || ||||||||||||||||| ||||| |||| || | | | | ||
Sbjct 25077 GCGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGT 25020
Query 23436 -GACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAAT 23493
||||||||||| |||| || | || | |||||||| || |||||||||||||| |
Sbjct 25019 CGACAAGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGT 24961
Query 23494 TCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTTAGCGAAGAAT 23553
|||| || || || | ||||| ||| | || | | ||||||| || ||
Sbjct 24960 TCCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGG 24901
Query 23554 CCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTATGACTATACACCGG 23613
|||| | ||| | ||||||||||| || ||| | ||||| ||||| || || |
Sbjct 24900 TCAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCG 24841
Query 23614 TGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATCACCGA 23656
|||| || || ||| ||||| | |||||||| ||||||||
Sbjct 24840 TGCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798
Score = 86.0 bits (94), Expect = 1e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 7710 CGGCATCGGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGC 7769
||| |||| | | || | ||| ||||||||||| || || | ||||||| ||| |
Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949
Query 7770 GGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAATTAAGGGCGCTGAGATATTCCGGCA 7829
| |||||||||||||||||||| |||||||| || | || ||| || || | |||||
Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889
Query 7830 GGCCGTACAGCTCCTGATTAATATCCGGCT 7859
| || || | ||||| | | ||| ||||
Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 93420091105842
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |