Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq7272 161 2e-35 >seq7272 Length=98981 Score = 161 bits (178), Expect = 2e-35 Identities = 641/995 (64%), Gaps = 23/995 (2%) Strand=Plus/Minus Query 8668 ACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCCGATGTATTCGACGTTG 8727 |||| ||| | ||||| || || || |||| |||||| | ||||| | | |||||| Sbjct 42065 ACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTG 42006 Query 8728 TATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCAC 8787 ||||| || || | | ||||||| ||| ||||| | |||||||| || || || Sbjct 42005 TATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAAC 41946 Query 8788 TGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCACG 8847 || ||||| || || | ||| ||||| || | | | ||||| |||||||| || Sbjct 41945 TGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACA 41886 Query 8848 CATCCGGCACTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCAGACCGGGCGGGAGC 8905 || || |||||| || || | ||||| || ||||||||||| || || Sbjct 41885 AGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGC 41828 Query 8906 CGAACGGATTCGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCATG 8964 | ||||| | | || ||| | || ||| | ||| ||| |||| | | Sbjct 41827 CAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATGG 41769 Query 8965 CAGCGTTGCAGCTCCTCGAACGGGAACAC--CGACGCCTTGTCGTCAACAAATTCACACA 9022 ||||| |||| | |||||| || ||| | |||| || ||||| | |||| Sbjct 41768 CAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCACA 41711 Query 9023 TGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTCAATGTCGAACA 9082 ||| |||||| | | || ||| | | ||| || | |||| |||||||| Sbjct 41710 TGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACA 41651 Query 9083 GCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGACCGTCCG 9142 | ||||||| || | | || ||| | ||||||||||||||||| |||| Sbjct 41650 GATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCT 41591 Query 9143 CACAGA-GAAGCCCACCGGCAAGAGCGTTATGACTGACGTCGATTTCCACGCGTTCGGCG 9201 | | | |||||| | | || | ||| ||| || | ||| | || | ||| || Sbjct 41590 CGCCGGTGAAGCCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTCCTTT 41532 Query 9202 GCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGCGCC 9261 ||||||| | ||||| |||| | ||| | || ||||| | |||| | Sbjct 41531 T---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGC 41475 Query 9262 AGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGACTCTGTGAGGCCATACCTGA 9320 || || || ||||| ||| || ||| |||| || | || ||||||||| Sbjct 41474 AGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCT 41416 Query 9321 TGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAGAAAATCTCGTCGACGTACAGGTC 9380 |||||||| | ||| || || || | ||| || | || |||| || || | Sbjct 41415 GGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATT 41356 Query 9381 GCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGCCGTT 9440 ||||| | |||||||||| || | | ||||| || ||| ||| | ||||| Sbjct 41355 GCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCC--- 41299 Query 9441 ATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGCCGGGCAAAGGC 9497 ||||| |||||| || ||||| || ||| || | || | | | |||||| || Sbjct 41298 ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCAAACGC 41239 Query 9498 GATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTT 9557 ||||||||| | ||||| |||| ||||||| |||||||| ||||||||||| || Sbjct 41238 GATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATT 41179 Query 9558 ATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAAT 9617 | || || |||||||| | ||| ||||||||| || || |||| || || || Sbjct 41178 GCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGAT 41119 Query 9618 CTGGCGGGATTTCAGGATATCGCGGATGCGGTGCT 9652 |||||| ||||| || || |||| |||| |||| Sbjct 41118 CTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084 Score = 127 bits (140), Expect = 4e-25 Identities = 346/523 (66%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 23139 GCGCTGGGACTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAC 23198 ||| |||| ||||| ||| |||||| |||||| || ||||| || || ||||| ||| Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256 Query 23199 GTCGGGGTAAACGGTGTTACCGGCATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGT 23256 || | |||| || ||||||||| | | || ||| | | |||| | Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCG--ACCTGCAAAGCT 25198 Query 23257 CCGGCACCGATGCTGACCTGCTGAACGAGTCAGGCGTCACAACGCTGATTCGTCGTGACG 23316 | | || || || ||||||| || ||| |||||| ||||| || | | Sbjct 25197 CGGAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGG 25138 Query 23317 GTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACT 23376 | | ||||||||||| || |||||| ||| ||||||| || || | Sbjct 25137 GCTATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCA 25078 Query 23377 ACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTG- 23435 | ||||| || ||||||||||||||||| ||||| |||| || | | | | || Sbjct 25077 GCGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGT 25020 Query 23436 -GACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAAT 23493 ||||||||||| |||| || | || | |||||||| || |||||||||||||| | Sbjct 25019 CGACAAGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGT 24961 Query 23494 TCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTTAGCGAAGAAT 23553 |||| || || || | ||||| ||| | || | | ||||||| || || Sbjct 24960 TCCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGG 24901 Query 23554 CCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTATGACTATACACCGG 23613 |||| | ||| | ||||||||||| || ||| | ||||| ||||| || || | Sbjct 24900 TCAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCG 24841 Query 23614 TGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATCACCGA 23656 |||| || || ||| ||||| | |||||||| |||||||| Sbjct 24840 TGCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Score = 86.0 bits (94), Expect = 1e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 7710 CGGCATCGGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGC 7769 ||| |||| | | || | ||| ||||||||||| || || | ||||||| ||| | Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949 Query 7770 GGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAATTAAGGGCGCTGAGATATTCCGGCA 7829 | |||||||||||||||||||| |||||||| || | || ||| || || | ||||| Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889 Query 7830 GGCCGTACAGCTCCTGATTAATATCCGGCT 7859 | || || | ||||| | | ||| |||| Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93420091105842