Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq7053 118 1e-21 seq9470 95.1 2e-14 seq9639 91.5 2e-13 seq6415 86.0 8e-12 >seq7053 Length=464797 Score = 118 bits (130), Expect = 1e-21 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 181369 CCTGATCGAAGTGATTGTTGTAGATGTGGGTATCACCAAG-GT-TGC-CGATCAGTTCCC 181425 |||| ||||| |||||| ||||| || | ||||| || || || ||| | | || Sbjct 70252 CCTGCTCGAAATGATTGGCATAGATATGCGCGTCACCCAGCGTATGAACGA--AATCACC 70309 Query 181426 CGACTTCAAGACCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGT 181485 || ||||| | || || |||| | || ||||||| ||||| || |||||||||| Sbjct 70310 CGGCTTCAGGCCCGTGA-CCTGCGCCACCATCAGTGTCAGCAGCGCATAGGAGGCGATGT 70368 Query 181486 TGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGT 181545 |||| || | || | ||||| || | || ||||||| |||||||||| || Sbjct 70369 TGAACGGCACGCCGAGGAAGATATCGGCAGAGCGCTGATAGAGCTGGCAGGACAGCTTTC 70428 Query 181546 CATTGCGAACATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACC- 181604 ||| | ||||||||||||||| | |||| || |||||||| |||||| || ||| Sbjct 70429 CATCGGAAACATAGAACTGGAACAGGCAGTGACAGGGCGGCAACGCCATTTCGTCCACCA 70488 Query 181605 GCGCCGACATTCCAAGCCGAGACCATATGACGACGG 181640 |||||| ||||| ||||| || || ||||||||| Sbjct 70489 GCGCCG-GGTTCCACGCCGAAACGATGTGACGACGG 70523 >seq9470 Length=127963 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520 ||||| || ||||| |||||||||||||| || | || | ||| | ||| | || ||| Sbjct 52708 GTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGGTCGGCCGAGCGC 52767 Query 181521 TGATTCCAAAGGCAGGACAGTTTGTCATTGCG-AACATAGAACTGGAATCCGTAGTGGCA 181579 || | |||||||||||||| || | || || |||||||||| | ||||||| Sbjct 52768 TGGTAAAGCAGGCAGGACAGTTT-TCCGTCCGCCACGAAGAACTGGAACAGGCAGTGGCA 52826 Query 181580 CGGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCATATGACGACG 181639 |||||||| ||||| ||||| || | ||||| |||||||| || || || || Sbjct 52827 CGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACGATGTGGCGGCG 52886 Query 181640 GCTG 181643 |||| Sbjct 52887 GCTG 52890 >seq9639 Length=103419 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 181326 AGTGTCGGCAAAGCCAACGGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGAAGTGATTG 181385 || ||||| | || || || | ||| | ||||| || ||||| |||||| ||| Sbjct 3663 AGCGTCGGGTAGGCGAAGGGCTGGCGCGCCAGCTGGGTCTCGACCTGGGTGAAGTGGTTG 3722 Query 181386 TTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGACCACATTCC 181445 |||||||||||| || || | | | ||| | || || || || || | |||| | Sbjct 3723 TTGTAGATGTGGCAGTCGCCGCCGGTCCAGATGAAGTCGCCCACCTCCAGGTCGCATTGC 3782 Query 181446 AGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAG 181505 | || | || || ||||| |||||||| ||||||||||||||||| |||| |||| Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842 Query 181506 ACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGG 181565 | |||| || ||||| | | ||||| || ||| | | | || ||||||||| Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902 Query 181566 AATCCGTAGTGGCACGGC 181583 || | |||||| ||| Sbjct 3903 AAGAAGGCGTGGCAGGGC 3920 >seq6415 Length=247467 Score = 86.0 bits (94), Expect = 8e-12 Identities = 219/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 181318 CGATCATCAGTGTCGGCAAAGCCAACGGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGA 181377 ||||| ||| ||||| || | | || |||||| |||||||| |||| |||| Sbjct 53608 CGATCGTCATGGTCGGGAACGGGTAGGGCTCGCGGGTCAGCTGTTCGCGGGCCTGGTCGA 53549 Query 181378 AGTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTC-CCCGACTTCAAGA 181436 ||| || |||| ||||| || || | | || || | || |||| || || | Sbjct 53548 GGTGGTTCAGATAGAGGTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGC 53489 Query 181437 CCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGC 181496 | || | | |||| || | ||||| || ||||| |||||||||||||| || | | Sbjct 53488 CGACGACCTTG-GCGACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACC 53430 Query 181497 CCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCATTGCG-AAC 181555 || ||||| ||||| || || |||| ||||| ||| || || | || || Sbjct 53429 CCTAAGAACACGTCGGCGCTGCGTTGATAGAGCTGGCAGCTCAGCTT-TCCGTCCGCGAC 53371 Query 181556 ATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACATT 181615 |||||||||| | ||||||| ||||||| ||||| ||||| || || || Sbjct 53370 GAAGAACTGGAACAGGCAGTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTT 53311 Query 181616 CCAAGCCGAGACCATATGACGACGGCTG 181643 ||| |||| ||| || || || |||||| Sbjct 53310 CCAGGCCGTGACGATGTGGCGGCGGCTG 53283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661229108451720