Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028945.1
Length=206713
Score E
Sequences producing significant alignments: (Bits) Value
seq7053 118 1e-21
seq9470 95.1 2e-14
seq9639 91.5 2e-13
seq6415 86.0 8e-12
>seq7053
Length=464797
Score = 118 bits (130), Expect = 1e-21
Identities = 197/276 (71%), Gaps = 8/276 (3%)
Strand=Plus/Plus
Query 181369 CCTGATCGAAGTGATTGTTGTAGATGTGGGTATCACCAAG-GT-TGC-CGATCAGTTCCC 181425
|||| ||||| |||||| ||||| || | ||||| || || || ||| | | ||
Sbjct 70252 CCTGCTCGAAATGATTGGCATAGATATGCGCGTCACCCAGCGTATGAACGA--AATCACC 70309
Query 181426 CGACTTCAAGACCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGT 181485
|| ||||| | || || |||| | || ||||||| ||||| || ||||||||||
Sbjct 70310 CGGCTTCAGGCCCGTGA-CCTGCGCCACCATCAGTGTCAGCAGCGCATAGGAGGCGATGT 70368
Query 181486 TGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGT 181545
|||| || | || | ||||| || | || ||||||| |||||||||| ||
Sbjct 70369 TGAACGGCACGCCGAGGAAGATATCGGCAGAGCGCTGATAGAGCTGGCAGGACAGCTTTC 70428
Query 181546 CATTGCGAACATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACC- 181604
||| | ||||||||||||||| | |||| || |||||||| |||||| || |||
Sbjct 70429 CATCGGAAACATAGAACTGGAACAGGCAGTGACAGGGCGGCAACGCCATTTCGTCCACCA 70488
Query 181605 GCGCCGACATTCCAAGCCGAGACCATATGACGACGG 181640
|||||| ||||| ||||| || || |||||||||
Sbjct 70489 GCGCCG-GGTTCCACGCCGAAACGATGTGACGACGG 70523
>seq9470
Length=127963
Score = 95.1 bits (104), Expect = 2e-14
Identities = 133/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520
||||| || ||||| |||||||||||||| || | || | ||| | ||| | || |||
Sbjct 52708 GTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGGTCGGCCGAGCGC 52767
Query 181521 TGATTCCAAAGGCAGGACAGTTTGTCATTGCG-AACATAGAACTGGAATCCGTAGTGGCA 181579
|| | |||||||||||||| || | || || |||||||||| | |||||||
Sbjct 52768 TGGTAAAGCAGGCAGGACAGTTT-TCCGTCCGCCACGAAGAACTGGAACAGGCAGTGGCA 52826
Query 181580 CGGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCATATGACGACG 181639
|||||||| ||||| ||||| || | ||||| |||||||| || || || ||
Sbjct 52827 CGGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACGATGTGGCGGCG 52886
Query 181640 GCTG 181643
||||
Sbjct 52887 GCTG 52890
>seq9639
Length=103419
Score = 91.5 bits (100), Expect = 2e-13
Identities = 175/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 181326 AGTGTCGGCAAAGCCAACGGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGAAGTGATTG 181385
|| ||||| | || || || | ||| | ||||| || ||||| |||||| |||
Sbjct 3663 AGCGTCGGGTAGGCGAAGGGCTGGCGCGCCAGCTGGGTCTCGACCTGGGTGAAGTGGTTG 3722
Query 181386 TTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGACCACATTCC 181445
|||||||||||| || || | | | ||| | || || || || || | |||| |
Sbjct 3723 TTGTAGATGTGGCAGTCGCCGCCGGTCCAGATGAAGTCGCCCACCTCCAGGTCGCATTGC 3782
Query 181446 AGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAG 181505
| || | || || ||||| |||||||| ||||||||||||||||| |||| ||||
Sbjct 3783 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 3842
Query 181506 ACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGG 181565
| |||| || ||||| | | ||||| || ||| | | | || |||||||||
Sbjct 3843 ATGTCCGCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 3902
Query 181566 AATCCGTAGTGGCACGGC 181583
|| | |||||| |||
Sbjct 3903 AAGAAGGCGTGGCAGGGC 3920
>seq6415
Length=247467
Score = 86.0 bits (94), Expect = 8e-12
Identities = 219/328 (67%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 181318 CGATCATCAGTGTCGGCAAAGCCAACGGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGA 181377
||||| ||| ||||| || | | || |||||| |||||||| |||| ||||
Sbjct 53608 CGATCGTCATGGTCGGGAACGGGTAGGGCTCGCGGGTCAGCTGTTCGCGGGCCTGGTCGA 53549
Query 181378 AGTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTC-CCCGACTTCAAGA 181436
||| || |||| ||||| || || | | || || | || |||| || || |
Sbjct 53548 GGTGGTTCAGATAGAGGTGGGCGTCGCCGAAGGTGTGGACGAACTCGCCCGGCTCCAGGC 53489
Query 181437 CCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGC 181496
| || | | |||| || | ||||| || ||||| |||||||||||||| || | |
Sbjct 53488 CGACGACCTTG-GCGACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACC 53430
Query 181497 CCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTGTCATTGCG-AAC 181555
|| ||||| ||||| || || |||| ||||| ||| || || | || ||
Sbjct 53429 CCTAAGAACACGTCGGCGCTGCGTTGATAGAGCTGGCAGCTCAGCTT-TCCGTCCGCGAC 53371
Query 181556 ATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACATT 181615
|||||||||| | ||||||| ||||||| ||||| ||||| || || ||
Sbjct 53370 GAAGAACTGGAACAGGCAGTGGCAGGGCGGCAGGGCCATGTCGTCGACATCGGCGGGGTT 53311
Query 181616 CCAAGCCGAGACCATATGACGACGGCTG 181643
||| |||| ||| || || || ||||||
Sbjct 53310 CCAGGCCGTGACGATGTGGCGGCGGCTG 53283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 661229108451720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |