Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq12569 268 4e-67 seq6089 190 8e-44 >seq12569 Length=80069 Score = 268 bits (296), Expect = 4e-67 Identities = 365/510 (72%), Gaps = 12/510 (2%) Strand=Plus/Minus Query 45614 GTGGATCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 45673 |||| ||||| |||||| || |||||||| | || |||||||| |||||| |||| Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639 Query 45674 AACGACTTCGGCCACACCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACA 45733 ||| ||||| |||||||||||||||| || ||||||| |||||||||| ||| | Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579 Query 45734 CCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 45793 ||| ||||||||||| | ||| |||||||||| | |||| |||||| |||||||| Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519 Query 45794 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGCCGA- 45852 ||| || || | |||||| |||| | | || || | ||||||| | ||| Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459 Query 45853 -----GGCGATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 45907 |||| |||| ||||| |||||||| |||||||||| | ||| | Sbjct 62458 TGCCGGGCGTGCTTC------CGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405 Query 45908 GTCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGC 45967 | ||||| || ||||| || ||||||||||| || |||||||||||| |||||||||| Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345 Query 45968 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCG 46027 || |||| | ||||||| ||| |||||| | | |||||||||| ||| ||| Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285 Query 46028 CAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGACTAC 46087 | | ||| ||| || || ||||||||| || || | || |||||| |||| Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTAC 62225 Query 46088 ACCCGTGCCCGTTGGCAGGTGGACGCGCAC 46117 | ||| || || |||||| | ||||||||| Sbjct 62224 AGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195 Score = 183 bits (202), Expect = 1e-41 Identities = 443/662 (67%), Gaps = 13/662 (2%) Strand=Plus/Minus Query 44228 CACCAGCGTGACCTGGTGCGTTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 44287 || ||||| | | |||| | ||||||||| || ||| || | ||||| || Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013 Query 44288 TTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCTGTCCCTGGCGAAGCAC 44347 ||||| |||| || | || | ||||||||||||| ||| || |||| | | Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTG--CGCGGATCATGCGCGA-GATC 63956 Query 44348 GGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGAC 44407 |||||| | || |||||||| || ||||| || |||||| |||||| | ||| Sbjct 63955 TCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGGAC 63896 Query 44408 GCCAACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG---C 44464 ||| |||||||||| || ||||||| |||| || | || || | | || | Sbjct 63895 GCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATCCC 63836 Query 44465 GACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTG 44524 | || |||| || |||||||| |||| || || ||||| ||| | ||||| | ||| Sbjct 63835 GGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-CTG 63777 Query 44525 TT-CACGGCCGTTTCACTCGACGAAGCGAGCGTGCTGCGCTCGTTCGGG---TCTAAGAC 44580 || | ||| || | || ||||| || ||||| ||||| ||||| || ||||| Sbjct 63776 TTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAGAC 63717 Query 44581 GTACCAGTCGTTCCTGGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCGACGGCCAC 44640 | | |||| || ||||||||| ||| |||| || | |||||| |||||||| Sbjct 63716 CTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCCAC 63657 Query 44641 GCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGA 44700 ||| ||||| ||| | || |||||| || ||| ||| | || || |||||||| Sbjct 63656 GCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATGGA 63597 Query 44701 CACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCA 44759 ||| ||| || || | |||| ||| ||| ||| || | || || ||||| Sbjct 63596 TGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-ACGCCCTCA 63538 Query 44760 CCCTGTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCGTTCG 44819 ||||| |||| ||||| ||||| ||||||| ||||| | | ||||| ||||| Sbjct 63537 CCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTTCG 63478 Query 44820 TGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCCGCTGGAGG 44879 | || ||| || ||||| | || | |||||| ||||||||||| ||| ||| Sbjct 63477 TCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTGCAGG 63418 Query 44880 TG 44881 || Sbjct 63417 TG 63416 Score = 87.8 bits (96), Expect = 7e-13 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 47393 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 47452 |||||| ||| ||||| ||||| ||||||||||||| | | || | || ||||| Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850 Query 47453 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 47512 |||||||||| ||||||||||| ||| |||||||| | || || | || | || Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790 Query 47513 CGCCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATCTG 47572 ||| |||| | | |||| |||| || | ||||| |||| | ||| ||| | | Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730 Query 47573 CAAGCCGAAGAGCGCCAG--CGCGACATGCCCAGCCTGTTCGACCT 47616 | ||| | |||| || ||||| ||| | ||| |||||||| Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686 >seq6089 Length=13452 Score = 190 bits (210), Expect = 8e-44 Identities = 486/729 (67%), Gaps = 32/729 (4%) Strand=Plus/Minus Query 44192 GTCGGCCCCGATGATGTTCACCCGATGCTGCTGCCGCACCAGCGTGACCTGGTGCGTTGG 44251 |||| | || |||| || || ||||| ||| | |||||| || ||||| || ||| Sbjct 4809 GTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGCTGGTCCGGTGG 4750 Query 44252 GCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATG 44311 || |||| || ||||| || ||||||||||| |||||||| |||||||| |||| ||| Sbjct 4749 GCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCAAGTCGGTCATG 4690 Query 44312 CAGTTGGAGATTGTCCGCCTGTCCCTGGCG--AAGCACGGCGGCGGTAAAGGTCTGATCG 44369 ||| ||||||| | |||| | | ||||| ||| |||||| | | ||||||| Sbjct 4689 CAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGCTGGGCGGCCGGCA---GCTGATCG 4635 Query 44370 TGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCAACATGCTGGGCATTGAAA 44429 | |||||||| |||| |||||| ||| | |||||| ||||||||| | || Sbjct 4634 TCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCTGGGCCTGGATC 4575 Query 44430 CCCGGTTCGTTCGCCGCACAG--AAGAAGTCG------GCGG------CGA-CGG---AA 44471 | ||| | ||| | || | ||| ||| |||| ||| ||| Sbjct 4574 CGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCCGAGCGGGCAGC 4515 Query 44472 TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGG 44531 | || || ||||||||||| ||||||||| || ||| | |||| ||| | |||| | Sbjct 4514 TGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGACGCATTTCAATG 4455 Query 44532 CCGTTTCACTCGACGAAGCGAGCGTG-CTGCGCTCGTT---CGGGTCTAAGACGTACCAG 44587 ||| || || |||||||| | |||| |||||| || ||| | ||||| | || Sbjct 4454 CCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCAAGACCTTCCGC 4396 Query 44588 TCGTTCCTGGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCGACGGCCACGCCATCG 44647 |||| || ||||||||||| ||| || || ||||| ||||||||||| ||| Sbjct 4395 GAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGGCCACGCCGTCG 4336 Query 44648 CCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGACACCGGT 44707 |||||| || | |||||| | ||| || | | || | | | ||||| ||| Sbjct 4335 CCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCATGGATGTCGGC 4276 Query 44708 GCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCACCCTGTA 44766 ||| || || | ||| ||||| || ||| ||||| || | || ||| | | Sbjct 4275 CAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA-GAAGGCCGACGAACTGACCATCCA 4217 Query 44767 CCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCGTTCGTGCAATC 44826 || |||||||| || |||| ||||| | || | |||||| || ||||| || Sbjct 4216 TCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCATTCGTCCAGCG 4157 Query 44827 CCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCCGCTGGAGGTGTTGTG 44886 ||| || || ||| || | |||||||||||||| |||||| ||| || Sbjct 4156 GCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTGGACGTGCGCTG 4097 Query 44887 GCATGAGGT 44895 ||||||||| Sbjct 4096 GCATGAGGT 4088 Score = 178 bits (196), Expect = 5e-40 Identities = 315/455 (69%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 45620 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 45679 ||||||||||||||| | || || || ||| || || || |||||||||| || || Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316 Query 45680 TTCGGCCACACCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAG 45739 |||||||| |||||||| ||| || |||| |||||||||||| || || || || Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256 Query 45740 CTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 45799 ||||||||| || | ||||||||| | || || || ||||| ||| | || Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198 Query 45800 TTCGGAAACG--TCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGC-CGAGGCG 45856 ||| | | | || || ||| | | |||| | |||||||| || || || Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139 Query 45857 ATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTCACCGAT 45916 ||| || ||| || ||||||| ||| || |||||| | || ||||||||||| Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079 Query 45917 GTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCC 45976 || || || || || || || |||||||||||| ||||||||||||| || ||| Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019 Query 45977 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 46036 | | |||||||||||| || ||||| | || ||||||| ||| |||| || ||| Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959 Query 46037 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 46071 || || || || ||||| || |||||||| Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190730686365412