Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028946.1
Length=59652
Score E
Sequences producing significant alignments: (Bits) Value
seq12569 268 4e-67
seq6089 190 8e-44
>seq12569
Length=80069
Score = 268 bits (296), Expect = 4e-67
Identities = 365/510 (72%), Gaps = 12/510 (2%)
Strand=Plus/Minus
Query 45614 GTGGATCTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTAC 45673
|||| ||||| |||||| || |||||||| | || |||||||| |||||| ||||
Sbjct 62698 GTGGGCCTGATCGTCACCTCGATCCCGTTCTCGACGCAGTACGAGTATTCGCCGAACTAC 62639
Query 45674 AACGACTTCGGCCACACCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACA 45733
||| ||||| |||||||||||||||| || ||||||| |||||||||| ||| |
Sbjct 62638 GCCGATTTCGGACACACCGACGACAACGCCCATTTCTGGCGACAGATGGACTTTCTCGCC 62579
Query 45734 CCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGC 45793
||| ||||||||||| | ||| |||||||||| | |||| |||||| ||||||||
Sbjct 62578 CCGGAGCTGCTGCGCGTGCTCGCGCCGGGCCGGGTGGCCGCCATCCACGTGAAGGACCGG 62519
Query 45794 ATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGCCGA- 45852
||| || || | |||||| |||| | | || || | ||||||| | |||
Sbjct 62518 ATCGTGCCAGGGGGTATGACCGGCCTCGGCTTTCAGACCGTCTACCCGTTCGCGGACGAC 62459
Query 45853 -----GGCGATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTC 45907
|||| |||| ||||| |||||||| |||||||||| | ||| |
Sbjct 62458 TGCCGGGCGTGCTTC------CGCAAGGCCGGCTTCGCCTACCTCGGCGAAAAGACCAAC 62405
Query 45908 GTCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGC 45967
| ||||| || ||||| || ||||||||||| || |||||||||||| ||||||||||
Sbjct 62404 CTGACCGACGTCGTCCGCGAGAACAACCAGACCTATCGGCTGGGCTGGAGCGAGCAGTGC 62345
Query 45968 AAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCG 46027
|| |||| | ||||||| ||| |||||| | | |||||||||| ||| |||
Sbjct 62344 AAGGACGGATCGCGCATGGGCGCGGGCCTGCCGGAAAAGGTGCTGCTGTTCCGCAAGCCG 62285
Query 46028 CAAACAGACAGGTCGAAGGGATACGCCGACACACCCGTCACCAAATCCAAGGACGACTAC 46087
| | ||| ||| || || ||||||||| || || | || |||||| ||||
Sbjct 62284 CCCTCCGACCTGTCCAACGGTTACGCCGACCGGCCGGTGTCGAAGGACAAGGATCGCTAC 62225
Query 46088 ACCCGTGCCCGTTGGCAGGTGGACGCGCAC 46117
| ||| || || |||||| | |||||||||
Sbjct 62224 AGCCGGGCGCGCTGGCAGCTCGACGCGCAC 62195
Score = 183 bits (202), Expect = 1e-41
Identities = 443/662 (67%), Gaps = 13/662 (2%)
Strand=Plus/Minus
Query 44228 CACCAGCGTGACCTGGTGCGTTGGGCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCG 44287
|| ||||| | | |||| | ||||||||| || ||| || | ||||| ||
Sbjct 64072 CATCAGCGGGCCATGGTCTGCTGGGCGGTCCGTCTCGGCCGGGCCGCCCTGTTCGCCGCC 64013
Query 44288 TTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCTGTCCCTGGCGAAGCAC 44347
||||| |||| || | || | ||||||||||||| ||| || |||| | |
Sbjct 64012 TTCGGCCTGGGGAAAAGCGTCGTCCAGTTGGAGATTG--CGCGGATCATGCGCGA-GATC 63956
Query 44348 GGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGAC 44407
|||||| | || |||||||| || ||||| || |||||| |||||| | |||
Sbjct 63955 TCCGGCGGGATGGGCCTGATCGTCATCCCGCTCGGCGTGCGGCAAGAGTTCATGCGGGAC 63896
Query 44408 GCCAACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGG---C 44464
||| |||||||||| || ||||||| |||| || | || || | | || |
Sbjct 63895 GCCGCCATGCTGGGCGTTCGCGTCCGGTTCATTCGGCGGATCGAGGAGGCGGACGATCCC 63836
Query 44465 GACGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTG 44524
| || |||| || |||||||| |||| || || ||||| ||| | ||||| | |||
Sbjct 63835 GGGGGCCTCTACCTGACCAACTACGAGACGGTTCGGGACGGCAAGCTCGACCCATC-CTG 63777
Query 44525 TT-CACGGCCGTTTCACTCGACGAAGCGAGCGTGCTGCGCTCGTTCGGG---TCTAAGAC 44580
|| | ||| || | || ||||| || ||||| ||||| ||||| || |||||
Sbjct 63776 TTTCGCGGTCGCCTGCCTGGACGAGGCCAGCGTTCTGCGAGGCTTCGGCGGCTCCAAGAC 63717
Query 44581 GTACCAGTCGTTCCTGGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCGACGGCCAC 44640
| | |||| || ||||||||| ||| |||| || | |||||| ||||||||
Sbjct 63716 CTTTCGCGAGTTCATGCGCCTGTTCGACCAGGTCGCCTATCGCTTCGTCGCCACGGCCAC 63657
Query 44641 GCCATCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGA 44700
||| ||||| ||| | || |||||| || ||| ||| | || || ||||||||
Sbjct 63656 GCCGTCGCCCAACGATTTCATAGAGCTGCTCGCCTATTCGGCGTTCCTGGGCGTGATGGA 63597
Query 44701 CACCGGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCA 44759
||| ||| || || | |||| ||| ||| ||| || | || || |||||
Sbjct 63596 TGTCGGGCAGGCCAAGACCCGGTTTTTCCGGCGAGACAGCGAGCACGCCG-ACGCCCTCA 63538
Query 44760 CCCTGTACCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCGTTCG 44819
||||| |||| ||||| ||||| ||||||| ||||| | | ||||| |||||
Sbjct 63537 CCCTGCACCCGCACAAAGAGCGCGAGTTCTGGCTGTGGTGCGCAAGCTGGGGTCTGTTCG 63478
Query 44820 TGCAATCCCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCCGCTGGAGG 44879
| || ||| || ||||| | || | |||||| ||||||||||| ||| |||
Sbjct 63477 TCCAGCGGCCGAGCGATCTCGGCTTCTCCGACGACGGCTACGACCTGCCGCCCCTGCAGG 63418
Query 44880 TG 44881
||
Sbjct 63417 TG 63416
Score = 87.8 bits (96), Expect = 7e-13
Identities = 156/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 47393 TGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGAG 47452
|||||| ||| ||||| ||||| ||||||||||||| | | || | || |||||
Sbjct 61909 TGCCCCCTGCCCTTCGATATCGTCGACCGGCTGATCATCCAGTGTTCCGAGCCGGGCGAC 61850
Query 47453 TTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTTGGT 47512
|||||||||| ||||||||||| ||| |||||||| | || || | || | ||
Sbjct 61849 GTGGTGTTCGATCCGTTCGGCGGCCTGATGACCGTGCCCTATCGCGCCATCAAGCACGGG 61790
Query 47513 CGCCGCGGCCGTGGTGTCGAGTTGAATCCCGGCTACTACTTCGATGCTGTCAAGTATCTG 47572
||| |||| | | |||| |||| || | ||||| |||| | ||| ||| | |
Sbjct 61789 CGCGTCGGCTGGGCGAACGAGCTGAACCCGGCCTACTTTCTCGACGGTGTGAAGCACGTC 61730
Query 47573 CAAGCCGAAGAGCGCCAG--CGCGACATGCCCAGCCTGTTCGACCT 47616
| ||| | |||| || ||||| ||| | ||| ||||||||
Sbjct 61729 GAGGCCATGGCGCGCGAGATGGCGAC--GCCGACCCTCTTCGACCT 61686
>seq6089
Length=13452
Score = 190 bits (210), Expect = 8e-44
Identities = 486/729 (67%), Gaps = 32/729 (4%)
Strand=Plus/Minus
Query 44192 GTCGGCCCCGATGATGTTCACCCGATGCTGCTGCCGCACCAGCGTGACCTGGTGCGTTGG 44251
|||| | || |||| || || ||||| ||| | |||||| || ||||| || |||
Sbjct 4809 GTCGCCGCCAATGACGTGCATCCGATCCTGAAGGGCCACCAGGCCGAGCTGGTCCGGTGG 4750
Query 44252 GCGGTCGCCGGGGGGCGGCGGGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATG 44311
|| |||| || ||||| || ||||||||||| |||||||| |||||||| |||| |||
Sbjct 4749 GCTGTCGAGGGCGGGCGCCGCGCGATCTTCGCTGCGTTCGGCCTGGGCAAGTCGGTCATG 4690
Query 44312 CAGTTGGAGATTGTCCGCCTGTCCCTGGCG--AAGCACGGCGGCGGTAAAGGTCTGATCG 44369
||| ||||||| | |||| | | ||||| ||| |||||| | | |||||||
Sbjct 4689 CAGCTGGAGATCATGCGCCAG--CTTGGCGCCCAGCTGGGCGGCCGGCA---GCTGATCG 4635
Query 44370 TGATGCCGCTGGGGGTGCGGATCGAGTTCGCCCACGACGCCAACATGCTGGGCATTGAAA 44429
| |||||||| |||| |||||| ||| | |||||| ||||||||| | ||
Sbjct 4634 TCGTGCCGCTGACCGTGCTGATCGAATTCAAGCGCGACGCGCTGATGCTGGGCCTGGATC 4575
Query 44430 CCCGGTTCGTTCGCCGCACAG--AAGAAGTCG------GCGG------CGA-CGG---AA 44471
| ||| | ||| | || | ||| ||| |||| ||| |||
Sbjct 4574 CGATTTTCATCCGCAGTACGGCCGAGATCTCGCTGCATGCGGATCGGCCGAGCGGGCAGC 4515
Query 44472 TCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGG 44531
| || || ||||||||||| ||||||||| || ||| | |||| ||| | |||| |
Sbjct 4514 TGTACCTGACCAACTATGAATCTGTCCGCGAAGGCAAGATCGACCTGACGCATTTCAATG 4455
Query 44532 CCGTTTCACTCGACGAAGCGAGCGTG-CTGCGCTCGTT---CGGGTCTAAGACGTACCAG 44587
||| || || |||||||| | |||| |||||| || ||| | ||||| | ||
Sbjct 4454 CCGCGTCGCTGGACGAAGC-ATCGTGCCTGCGCGGTTTTGGCGGCACCAAGACCTTCCGC 4396
Query 44588 TCGTTCCTGGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCGACGGCCACGCCATCG 44647
|||| || ||||||||||| ||| || || ||||| ||||||||||| |||
Sbjct 4395 GAGTTCATGCGGCTGTTCGACGGCATGCAATATAAGTTTGTCGCCACGGCCACGCCGTCG 4336
Query 44648 CCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGACACCGGT 44707
|||||| || | |||||| | ||| || | | || | | | ||||| |||
Sbjct 4335 CCGAACGACTATATCGAGCTGCTGGCCTATGCCGCCTTCCTGGAGATCATGGATGTCGGC 4276
Query 44708 GCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCACCCTGTA 44766
||| || || | ||| ||||| || ||| ||||| || | || ||| | |
Sbjct 4275 CAGGCCAAGACCCGGTTCTTCAAGCGGAACAGCGA-GAAGGCCGACGAACTGACCATCCA 4217
Query 44767 CCCACACAAGGAGCGTGAGTTCTTCTTGTGGCTCAACACCTGGGCGGCGTTCGTGCAATC 44826
|| |||||||| || |||| ||||| | || | |||||| || ||||| ||
Sbjct 4216 TCCGCACAAGGAAGAGGAATTCTGGCTGTGGGTGAATAGCTGGGCCGCATTCGTCCAGCG 4157
Query 44827 CCCGGCAGACCTCGGTCACGACGCCACCGGCTATGACCTGCCGCCGCTGGAGGTGTTGTG 44886
||| || || ||| || | |||||||||||||| |||||| ||| ||
Sbjct 4156 GCCGAGCGATCTGGGTTTTTCCGACGAGGGCTATGACCTGCCCGAGCTGGACGTGCGCTG 4097
Query 44887 GCATGAGGT 44895
|||||||||
Sbjct 4096 GCATGAGGT 4088
Score = 178 bits (196), Expect = 5e-40
Identities = 315/455 (69%), Gaps = 6/455 (1%)
Strand=Plus/Minus
Query 45620 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAC 45679
||||||||||||||| | || || || ||| || || || |||||||||| || ||
Sbjct 3375 CTGATTGTCACCAGCGTGCCCTTTGGCACCCAATATGAATATTCGCCGAGCTATAATGAT 3316
Query 45680 TTCGGCCACACCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAG 45739
|||||||| |||||||| ||| || |||| |||||||||||| || || || ||
Sbjct 3315 TTCGGCCATACCGACGATGCCGACCATTTCTTCGCGCAGATGGACTATCTGACGCCCGAG 3256
Query 45740 CTGCTGCGCATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 45799
||||||||| || | ||||||||| | || || || ||||| ||| | ||
Sbjct 3255 CTGCTGCGCGTCTTGCAGCCGGGCCGGCGCCTGGCGGTGCATGTGAAGGATCGCGT--TG 3198
Query 45800 TTCGGAAACG--TCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGC-CGAGGCG 45856
||| | | | || || ||| | | |||| | |||||||| || || ||
Sbjct 3197 TTCCGTCGGGCATGACGGGTCTGGGCTTCCGCACGATCGAGCCGTTCCATGCGCGCTGC- 3139
Query 45857 ATCTTCCACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTCACCGAT 45916
||| || ||| || ||||||| ||| || |||||| | || |||||||||||
Sbjct 3138 ATCGATCATTATCGCCGGCATGGCTTCGCCTATCTGGGCATGGTGACGATCGTCACCGAT 3079
Query 45917 GTGGTCCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCC 45976
|| || || || || || || |||||||||||| ||||||||||||| || |||
Sbjct 3078 GTCGTTCGCGAGAATGCGGGCACTTATCGGCTGGGCTGGACCGAGCAGTGCAAGGATGCC 3019
Query 45977 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 46036
| | |||||||||||| || ||||| | || ||||||| ||| |||| || |||
Sbjct 3018 AGCGGCATGGGCGTCGGCCTGCCCGAATATCTGCTACTGTTCCGCAAGCCGCCGACCGAC 2959
Query 46037 AGGTCGAAGGGATACGCCGACACACCCGTCACCAA 46071
|| || || || ||||| || ||||||||
Sbjct 2958 CGGAGCAACGGCTATGCCGATGTGCCGGTCACCAA 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190730686365412
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