Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028950.1
Length=223932
Score E
Sequences producing significant alignments: (Bits) Value
seq10652 105 1e-17
>seq10652
Length=111799
Score = 105 bits (116), Expect = 1e-17
Identities = 175/253 (69%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 99223 CTCAGGAACCACATCGCCAGCACGACGAACGATCACCTTATCGCCAATTCGCAGACCTTT 99282
||| |||| |||||| || || | ||| || ||||| |||||||||| | | ||||
Sbjct 67966 CTCCGGAATCACATCCCCTGCCCTACGCACAATCACAGTATCGCCAATATAAATATCTTT 68025
Query 99283 GCGATGGATTTCATCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCCACGAA 99342
||| | ||||||||||||||||| || ||||||| || || || || || ||
Sbjct 68026 GCGTCTTAGCTCATCTTCGTTATGCAGCGTAGCGTTGGTGACTGTTACTCCACCTACAAA 68085
Query 99343 AACGGGCTTCAGGCGCCCCACGGGGGTGATGGCTCCCGTTCTACCTACTTGAACTTCAAT 99402
|| || || | ||| |||| ||||| ||||| || |||||||| ||||| || |||
Sbjct 68086 CACCGGTTTTAAGCGTGCCACCGGGGTAATGGCACCAGTTCTACCCACTTGCACCGTAAT 68145
Query 99403 CGCCTCTAGCGTCGTTACAGCCTCTTCTGCAGGGAACTTCCACGCGATAGCAAAACGAGG 99462
| || | | || || |||||||| || || || ||| || || |||| ||
Sbjct 68146 ATCGTCCACAATGGTGGTGGCTTCTTCTGCCGGAAATTTATGCGCAATGGCCCAACGCGG 68205
Query 99463 GGCGCGAGACACA 99475
|| || || |||
Sbjct 68206 TGCACGTGAGACA 68218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716319536414880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |