Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028950.1 Length=223932 Score E Sequences producing significant alignments: (Bits) Value seq10652 105 1e-17 >seq10652 Length=111799 Score = 105 bits (116), Expect = 1e-17 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 99223 CTCAGGAACCACATCGCCAGCACGACGAACGATCACCTTATCGCCAATTCGCAGACCTTT 99282 ||| |||| |||||| || || | ||| || ||||| |||||||||| | | |||| Sbjct 67966 CTCCGGAATCACATCCCCTGCCCTACGCACAATCACAGTATCGCCAATATAAATATCTTT 68025 Query 99283 GCGATGGATTTCATCTTCGTTATGCAGTGTTGCGTTGGAAACCCACACACCGCCCACGAA 99342 ||| | ||||||||||||||||| || ||||||| || || || || || || Sbjct 68026 GCGTCTTAGCTCATCTTCGTTATGCAGCGTAGCGTTGGTGACTGTTACTCCACCTACAAA 68085 Query 99343 AACGGGCTTCAGGCGCCCCACGGGGGTGATGGCTCCCGTTCTACCTACTTGAACTTCAAT 99402 || || || | ||| |||| ||||| ||||| || |||||||| ||||| || ||| Sbjct 68086 CACCGGTTTTAAGCGTGCCACCGGGGTAATGGCACCAGTTCTACCCACTTGCACCGTAAT 68145 Query 99403 CGCCTCTAGCGTCGTTACAGCCTCTTCTGCAGGGAACTTCCACGCGATAGCAAAACGAGG 99462 | || | | || || |||||||| || || || ||| || || |||| || Sbjct 68146 ATCGTCCACAATGGTGGTGGCTTCTTCTGCCGGAAATTTATGCGCAATGGCCCAACGCGG 68205 Query 99463 GGCGCGAGACACA 99475 || || || ||| Sbjct 68206 TGCACGTGAGACA 68218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716319536414880