Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028954.1
Length=36065
Score E
Sequences producing significant alignments: (Bits) Value
seq9622 190 5e-44
>seq9622
Length=151425
Score = 190 bits (210), Expect = 5e-44
Identities = 525/791 (66%), Gaps = 49/791 (6%)
Strand=Plus/Minus
Query 15072 CACCTATTCCGGCCCGGCCGAATGGTCCTATCGCCGGTTTATCCTGCATCTTGCCGCGCT 15131
|||||||||||| ||||| |||||| || ||||| ||||||||||| |||| |||
Sbjct 83366 CACCTATTCCGGTCCGGCGGAATGGAGCTTCCGCCGCTTTATCCTGCACAATGCCAGGCT 83307
Query 15132 GGC-GCGCAACGCGGGCGGCGTGGACGCCTTTCTGATCGGGTCGGAATTGGTGGACCTGA 15190
||| |||| || ||||| ||||| |||| |||||||| |||||| |||| | ||
Sbjct 83306 GGCGGCGC-TGGCCGGCGGGGTGGAGTCCTTCCTGATCGGTTCGGAACTGGTCGGGCTAT 83248
Query 15191 C-CACG-----GCCACCGACACGGCCGGGGTTTATCCGTTCGTCAATTCGCTGGTGACGC 15244
| || | | ||| |||| || |||||||||||| | | ||| |||||
Sbjct 83247 CGCAGGTGCGCTCGTCCGGCACGACC------TATCCGTTCGTCGACGCACTGAAGACGC 83194
Query 15245 TGGCGGCGGACGTCAAGGGCATGTTGCCCGGCGCGGCCGTG----TC--CTATGCCGCCG 15298
||||||| || | | |||| || ||||| | |||| || || |||||||
Sbjct 83193 TGGCGGCCGAGGCGCGCGCCATGCTG---GGCGCCGGCGTGAAGCTCGGTTACGCCGCCG 83137
Query 15299 ACTGGTCCGAATATCATTCGCACC------GCGACGG--CGGGC-AGGTCTATTTCCACC 15349
||||||| |||||||| |||| |||| || ||||| | |||| ||| |||
Sbjct 83136 ACTGGTCGGAATATCACAGCCACCGGCCGGGCGATGGTTCGGGCGACGTCTTCTTCAACC 83077
Query 15350 TTGATCCGCTGTGGG-CTTCGCCTTCGGTCGATTTCGTGGGGATTGATAACTACCTGCCT 15408
| |||||||| |||| | |||| |||| ||| | || || || || ||||||||
Sbjct 83076 TCGATCCGCTCTGGGCCGACGCC-AATATCGACTTCATCGGCATCGACAATTACCTGCCC 83018
Query 15409 TTGTCGGACTGGCGGCCCGGGGCCGATCATGCCGACTATGACCCCGAAACCGGCGTGACG 15468
||||||||||||| ||| | | ||| || | ||||| | |||| | |
Sbjct 83017 CTGTCGGACTGGCGCGACGGCTCGGCGCATCTGGATTTCGACCCGG---CCGG---GCCA 82964
Query 15469 TCGCC---CTATTGTCTGGACTATCTGAAAGGCCAGATCGAGGGCGGCGAATATTGGGAT 15525
||| | ||| | || |||||| ||| | ||| ||||||||||||| ||
Sbjct 82963 TCGACCATCTACGACCAGGCCTATCTTCGCGGCAACGTCGCCGGCGGCGAATATTTCGAC 82904
Query 15526 TATTACTATGCGTCCCAAGCTGACCGCGACCGGCAGATTCGCACCCCGATTTCCGATCTG 15585
| | ||| || || | || | ||| || |||| ||||| ||||| ||||
Sbjct 82903 TGGTTCTACGCTTCGGAGGCCGCGCGCAACGCGCAGGCACGCACGCCGATCACCGACGGC 82844
Query 15586 GGCTATGGTGAACATTGGGTGTTCCGCCAGAAGGCAATCCGCGACTGGTGGTCCAGCAAT 15645
| | |||| || | | || |||||| | |||| || | | ||||||| | |||
Sbjct 82843 GCCCATGGCGAGCCCTTCGTTTTCCGCAACAAGGACATTCTGGGCTGGTGG---CGGAAT 82787
Query 15646 ---CACCACAACCGGCCCGGCGGGATCCGGGCGGGCGCGAAAACGTCCTGGACTCCGGGT 15702
|| ||||||||||| |||||| | ||| |||| || |||| ||| |
Sbjct 82786 GCCCATCACAACCGGCCGGGCGGGGTTCGGAGCGGCGGTTCTACCAACTGGGTGCCGCGC 82727
Query 15703 TCCAAGCCGGTCTGGTTCACCGAATACGGTTGCCCGGCCGTCCATCTTGGACCAAATCAG 15762
|| |||||| | | ||||||||| || |||||||||||| | || | || |||
Sbjct 82726 TCGAAGCCGCTGCGTTTCACCGAACTGGGCTGCCCGGCCGTCGACAAGGGCGCCAACCAG 82667
Query 15763 CCGAACGTGTTCTTTGACGCGCTTTCGTCGGAGGCCGCCTTGCCGCATTATTCCAATGGT 15822
|||||| | ||| ||| | || ||||||| || ||| ||| | ||||| |||
Sbjct 82666 CCGAACCTTTTCCCCGACCGCCGCTCTTCGGAGGGCGGCTTTCCGTGGTTTTCCAGCGGT 82607
Query 15823 GCGCGGGACGA 15833
|| || |||||
Sbjct 82606 GCCCGCGACGA 82596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 115265783837466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |