Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028954.1 Length=36065 Score E Sequences producing significant alignments: (Bits) Value seq9622 190 5e-44 >seq9622 Length=151425 Score = 190 bits (210), Expect = 5e-44 Identities = 525/791 (66%), Gaps = 49/791 (6%) Strand=Plus/Minus Query 15072 CACCTATTCCGGCCCGGCCGAATGGTCCTATCGCCGGTTTATCCTGCATCTTGCCGCGCT 15131 |||||||||||| ||||| |||||| || ||||| ||||||||||| |||| ||| Sbjct 83366 CACCTATTCCGGTCCGGCGGAATGGAGCTTCCGCCGCTTTATCCTGCACAATGCCAGGCT 83307 Query 15132 GGC-GCGCAACGCGGGCGGCGTGGACGCCTTTCTGATCGGGTCGGAATTGGTGGACCTGA 15190 ||| |||| || ||||| ||||| |||| |||||||| |||||| |||| | || Sbjct 83306 GGCGGCGC-TGGCCGGCGGGGTGGAGTCCTTCCTGATCGGTTCGGAACTGGTCGGGCTAT 83248 Query 15191 C-CACG-----GCCACCGACACGGCCGGGGTTTATCCGTTCGTCAATTCGCTGGTGACGC 15244 | || | | ||| |||| || |||||||||||| | | ||| ||||| Sbjct 83247 CGCAGGTGCGCTCGTCCGGCACGACC------TATCCGTTCGTCGACGCACTGAAGACGC 83194 Query 15245 TGGCGGCGGACGTCAAGGGCATGTTGCCCGGCGCGGCCGTG----TC--CTATGCCGCCG 15298 ||||||| || | | |||| || ||||| | |||| || || ||||||| Sbjct 83193 TGGCGGCCGAGGCGCGCGCCATGCTG---GGCGCCGGCGTGAAGCTCGGTTACGCCGCCG 83137 Query 15299 ACTGGTCCGAATATCATTCGCACC------GCGACGG--CGGGC-AGGTCTATTTCCACC 15349 ||||||| |||||||| |||| |||| || ||||| | |||| ||| ||| Sbjct 83136 ACTGGTCGGAATATCACAGCCACCGGCCGGGCGATGGTTCGGGCGACGTCTTCTTCAACC 83077 Query 15350 TTGATCCGCTGTGGG-CTTCGCCTTCGGTCGATTTCGTGGGGATTGATAACTACCTGCCT 15408 | |||||||| |||| | |||| |||| ||| | || || || || |||||||| Sbjct 83076 TCGATCCGCTCTGGGCCGACGCC-AATATCGACTTCATCGGCATCGACAATTACCTGCCC 83018 Query 15409 TTGTCGGACTGGCGGCCCGGGGCCGATCATGCCGACTATGACCCCGAAACCGGCGTGACG 15468 ||||||||||||| ||| | | ||| || | ||||| | |||| | | Sbjct 83017 CTGTCGGACTGGCGCGACGGCTCGGCGCATCTGGATTTCGACCCGG---CCGG---GCCA 82964 Query 15469 TCGCC---CTATTGTCTGGACTATCTGAAAGGCCAGATCGAGGGCGGCGAATATTGGGAT 15525 ||| | ||| | || |||||| ||| | ||| ||||||||||||| || Sbjct 82963 TCGACCATCTACGACCAGGCCTATCTTCGCGGCAACGTCGCCGGCGGCGAATATTTCGAC 82904 Query 15526 TATTACTATGCGTCCCAAGCTGACCGCGACCGGCAGATTCGCACCCCGATTTCCGATCTG 15585 | | ||| || || | || | ||| || |||| ||||| ||||| |||| Sbjct 82903 TGGTTCTACGCTTCGGAGGCCGCGCGCAACGCGCAGGCACGCACGCCGATCACCGACGGC 82844 Query 15586 GGCTATGGTGAACATTGGGTGTTCCGCCAGAAGGCAATCCGCGACTGGTGGTCCAGCAAT 15645 | | |||| || | | || |||||| | |||| || | | ||||||| | ||| Sbjct 82843 GCCCATGGCGAGCCCTTCGTTTTCCGCAACAAGGACATTCTGGGCTGGTGG---CGGAAT 82787 Query 15646 ---CACCACAACCGGCCCGGCGGGATCCGGGCGGGCGCGAAAACGTCCTGGACTCCGGGT 15702 || ||||||||||| |||||| | ||| |||| || |||| ||| | Sbjct 82786 GCCCATCACAACCGGCCGGGCGGGGTTCGGAGCGGCGGTTCTACCAACTGGGTGCCGCGC 82727 Query 15703 TCCAAGCCGGTCTGGTTCACCGAATACGGTTGCCCGGCCGTCCATCTTGGACCAAATCAG 15762 || |||||| | | ||||||||| || |||||||||||| | || | || ||| Sbjct 82726 TCGAAGCCGCTGCGTTTCACCGAACTGGGCTGCCCGGCCGTCGACAAGGGCGCCAACCAG 82667 Query 15763 CCGAACGTGTTCTTTGACGCGCTTTCGTCGGAGGCCGCCTTGCCGCATTATTCCAATGGT 15822 |||||| | ||| ||| | || ||||||| || ||| ||| | ||||| ||| Sbjct 82666 CCGAACCTTTTCCCCGACCGCCGCTCTTCGGAGGGCGGCTTTCCGTGGTTTTCCAGCGGT 82607 Query 15823 GCGCGGGACGA 15833 || || ||||| Sbjct 82606 GCCCGCGACGA 82596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115265783837466