Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028955.1
Length=197361
Score E
Sequences producing significant alignments: (Bits) Value
seq9429 136 5e-27
>seq9429
Length=202388
Score = 136 bits (150), Expect = 5e-27
Identities = 338/512 (66%), Gaps = 21/512 (4%)
Strand=Plus/Plus
Query 155891 TTTGATGAAATCTATCAGTTTGCTGCTGACATGGGTGGTGCAGGTTTTGTTTTCACTGGA 155950
||||| || | |||||| | || || || ||||| ||||| |||| | |||| || ||
Sbjct 3105 TTTGACGAGGTTTATCAGCTCGCAGCGGATATGGGCGGTGCCGGTTATATTTTTACCGGC 3164
Query 155951 GAAAATGATGCTGCCATTATGCAGAACTCAGCAACAATTAACTTGAATATATTAGAACAA 156010
||| | || || | ||| ||||| ||||| || || |||||| | ||||| ||
Sbjct 3165 GAACACGACGCCGACATAATGCATAACTCTGCGACGATTAACCTCAATATCGCTGACGTT 3224
Query 156011 CAAAGAATATTAAATGAAAGTTTATCTGTAAACAAAACTAAAATATTCTACTCTGGTTCA 156070
|||| || | || |||| ||| || | ||||| || ||
Sbjct 3225 GCCAGAA-----AACGTAA---TATC--------AAA--AAGGTTTTCTATTCGTCGTCC 3266
Query 156071 GCTTGTATGTATCCAGAACACAACCAACTTGATCCTAATAATCCTGACTGTCGTGAATCA 156130
|| || |||||||||| | || || || || ||||||| | || |||||
Sbjct 3267 GCCTGCATGTATCCAGCGTATAATCAGGAAGACCCAGATAATCCGAATTGCAGTGAAGAG 3326
Query 156131 TCAGCATATCCAGCAAACCCAGACTCAGAGTATGGATGGGAAAAACTCTTCTCCGAGCGT 156190
|| || ||||| ||| || ||||| || ||||| |||||||| || ||||| ||||||
Sbjct 3327 TCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTGGGAAAAGCTGTTCTCGGAGCGT 3386
Query 156191 TTGTATTTTTCTTATCACCGTAATTATGGTATACCTGTACGCGTCACTAGATACCATAAC 156250
|||||| | ||||| |||| || || || || | || || ||||||| |||||
Sbjct 3387 TTGTATCTCGCTTATAACCGCAACTACGGCATGGCGAACCGGGTGGCTAGATATCATAAT 3446
Query 156251 ATCTATGGTCCTGAAGGCACTTGGGACGGAGGCAGAGAAAAAGCACCAGCAGCAATCTGT 156310
|| | ||| || || || || ||| | || || | |||||| || || || ||| ||||
Sbjct 3447 ATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGAAAAGGCTCCCGCGGCAGTCTGC 3506
Query 156311 AGAAAAGTAGCAAGACTTCCTGGTGTAGGTGGTGGTATAGAAGTATGGGGAGATGGACAA 156370
| || || || ||| | | |||| || || ||||||||||||| |
Sbjct 3507 CGTAAGGTGGC---ACTCGCCGCCAACAACGGTGAAATCGAGATATGGGGAGATGGTAAC 3563
Query 156371 CAAACAAGATCTTTCCTATACATTGATGAGTG 156402
|| || | || ||||| || |||||||| ||
Sbjct 3564 CAGACGCGCTCGTTCCTCTATATTGATGAATG 3595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631308341722440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |