Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq9429 136 5e-27 >seq9429 Length=202388 Score = 136 bits (150), Expect = 5e-27 Identities = 338/512 (66%), Gaps = 21/512 (4%) Strand=Plus/Plus Query 155891 TTTGATGAAATCTATCAGTTTGCTGCTGACATGGGTGGTGCAGGTTTTGTTTTCACTGGA 155950 ||||| || | |||||| | || || || ||||| ||||| |||| | |||| || || Sbjct 3105 TTTGACGAGGTTTATCAGCTCGCAGCGGATATGGGCGGTGCCGGTTATATTTTTACCGGC 3164 Query 155951 GAAAATGATGCTGCCATTATGCAGAACTCAGCAACAATTAACTTGAATATATTAGAACAA 156010 ||| | || || | ||| ||||| ||||| || || |||||| | ||||| || Sbjct 3165 GAACACGACGCCGACATAATGCATAACTCTGCGACGATTAACCTCAATATCGCTGACGTT 3224 Query 156011 CAAAGAATATTAAATGAAAGTTTATCTGTAAACAAAACTAAAATATTCTACTCTGGTTCA 156070 |||| || | || |||| ||| || | ||||| || || Sbjct 3225 GCCAGAA-----AACGTAA---TATC--------AAA--AAGGTTTTCTATTCGTCGTCC 3266 Query 156071 GCTTGTATGTATCCAGAACACAACCAACTTGATCCTAATAATCCTGACTGTCGTGAATCA 156130 || || |||||||||| | || || || || ||||||| | || ||||| Sbjct 3267 GCCTGCATGTATCCAGCGTATAATCAGGAAGACCCAGATAATCCGAATTGCAGTGAAGAG 3326 Query 156131 TCAGCATATCCAGCAAACCCAGACTCAGAGTATGGATGGGAAAAACTCTTCTCCGAGCGT 156190 || || ||||| ||| || ||||| || ||||| |||||||| || ||||| |||||| Sbjct 3327 TCGGCTTATCCCGCAGCGCCTGACTCTGAATATGGTTGGGAAAAGCTGTTCTCGGAGCGT 3386 Query 156191 TTGTATTTTTCTTATCACCGTAATTATGGTATACCTGTACGCGTCACTAGATACCATAAC 156250 |||||| | ||||| |||| || || || || | || || ||||||| ||||| Sbjct 3387 TTGTATCTCGCTTATAACCGCAACTACGGCATGGCGAACCGGGTGGCTAGATATCATAAT 3446 Query 156251 ATCTATGGTCCTGAAGGCACTTGGGACGGAGGCAGAGAAAAAGCACCAGCAGCAATCTGT 156310 || | ||| || || || || ||| | || || | |||||| || || || ||| |||| Sbjct 3447 ATTTTTGGCCCAGAGGGGACGTGGCAGGGCGGAAAAGAAAAGGCTCCCGCGGCAGTCTGC 3506 Query 156311 AGAAAAGTAGCAAGACTTCCTGGTGTAGGTGGTGGTATAGAAGTATGGGGAGATGGACAA 156370 | || || || ||| | | |||| || || ||||||||||||| | Sbjct 3507 CGTAAGGTGGC---ACTCGCCGCCAACAACGGTGAAATCGAGATATGGGGAGATGGTAAC 3563 Query 156371 CAAACAAGATCTTTCCTATACATTGATGAGTG 156402 || || | || ||||| || |||||||| || Sbjct 3564 CAGACGCGCTCGTTCCTCTATATTGATGAATG 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631308341722440