Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028956.1
Length=52139
Score E
Sequences producing significant alignments: (Bits) Value
seq7142 80.6 9e-11
seq659 80.6 9e-11
>seq7142
Length=3483
Score = 80.6 bits (88), Expect = 9e-11
Identities = 182/265 (69%), Gaps = 24/265 (9%)
Strand=Plus/Plus
Query 18363 AAAG-TCAAAGTGCCAAGCAATTATGATCCAGTTAAACGCACTTACACCGGCTTTTGGGA 18421
|||| ||||||| |||||||| ||||||||||| | || || |||| ||| | |||||
Sbjct 722 AAAGATCAAAGTACCAAGCAACTATGATCCAGTAAGCCGAACCTACATCGGGATATGGGA 781
Query 18422 CGGCACATTTAAAGTTGCGTGGACGAACAACCCTGCTTGGGAAATTTAC---GATTTAGC 18478
|| |||||| || | | || || || |||||| |||||| ||||||
Sbjct 782 TGGTCTATTTAAGCGCGCTTATAGCAATAATCCAGCTTGG---ATTTACTATGATTTATG 838
Query 18479 TCCGATTTTAAGCAAAATG--CTTGG----GGTTGAA---ATCAGCT--TTGATAAATGG 18527
| | | ||||| | ||| ||||| ||| || |||| | |||||||||||
Sbjct 839 TACCA--ATAAGCGATATGCACTTGGCAACCGTTTAACCGATCAAATGATTGATAAATGG 896
Query 18528 GCGTTGTATGACGTCT--CTCGCTATTGCGATCAGCTTGTGCCGGACGGTATGGGCGGAC 18585
| || ||| ||| | | | ||||| |||||||| || ||| | || | || || |
Sbjct 897 TCTTTATAT--CGTTTAGCACAATATTGTGATCAGCTGGTACCGAATGGCAAAGGTGGTC 954
Query 18586 AAGAGCCACGTTTTACCTGTGATGT 18610
|||||||||| || || ||| ||||
Sbjct 955 AAGAGCCACGGTTCACATGTAATGT 979
>seq659
Length=6232
Score = 80.6 bits (88), Expect = 9e-11
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 35085 AATACGCTCTGCTTCGTCTTGGTCGTAAATACCCGTAAAGCCAAAGGCTAATCTTGCACA 35144
||| || ||||||||||| ||||| ||||| || ||||||||||||||| | ||||||
Sbjct 119 AATTCGTTCTGCTTCGTCCTGGTCATAAATTCCAACAAAGCCAAAGGCTAAACGTGCACA 178
Query 35145 TTGGATCATTGCTTTATGGCGTAA 35168
||| || | ||||| || |||||
Sbjct 179 TTGTATAGTCGCTTTGTGTCGTAA 202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 166693385619558
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |