Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq7142 80.6 9e-11 seq659 80.6 9e-11 >seq7142 Length=3483 Score = 80.6 bits (88), Expect = 9e-11 Identities = 182/265 (69%), Gaps = 24/265 (9%) Strand=Plus/Plus Query 18363 AAAG-TCAAAGTGCCAAGCAATTATGATCCAGTTAAACGCACTTACACCGGCTTTTGGGA 18421 |||| ||||||| |||||||| ||||||||||| | || || |||| ||| | ||||| Sbjct 722 AAAGATCAAAGTACCAAGCAACTATGATCCAGTAAGCCGAACCTACATCGGGATATGGGA 781 Query 18422 CGGCACATTTAAAGTTGCGTGGACGAACAACCCTGCTTGGGAAATTTAC---GATTTAGC 18478 || |||||| || | | || || || |||||| |||||| |||||| Sbjct 782 TGGTCTATTTAAGCGCGCTTATAGCAATAATCCAGCTTGG---ATTTACTATGATTTATG 838 Query 18479 TCCGATTTTAAGCAAAATG--CTTGG----GGTTGAA---ATCAGCT--TTGATAAATGG 18527 | | | ||||| | ||| ||||| ||| || |||| | ||||||||||| Sbjct 839 TACCA--ATAAGCGATATGCACTTGGCAACCGTTTAACCGATCAAATGATTGATAAATGG 896 Query 18528 GCGTTGTATGACGTCT--CTCGCTATTGCGATCAGCTTGTGCCGGACGGTATGGGCGGAC 18585 | || ||| ||| | | | ||||| |||||||| || ||| | || | || || | Sbjct 897 TCTTTATAT--CGTTTAGCACAATATTGTGATCAGCTGGTACCGAATGGCAAAGGTGGTC 954 Query 18586 AAGAGCCACGTTTTACCTGTGATGT 18610 |||||||||| || || ||| |||| Sbjct 955 AAGAGCCACGGTTCACATGTAATGT 979 >seq659 Length=6232 Score = 80.6 bits (88), Expect = 9e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 35085 AATACGCTCTGCTTCGTCTTGGTCGTAAATACCCGTAAAGCCAAAGGCTAATCTTGCACA 35144 ||| || ||||||||||| ||||| ||||| || ||||||||||||||| | |||||| Sbjct 119 AATTCGTTCTGCTTCGTCCTGGTCATAAATTCCAACAAAGCCAAAGGCTAAACGTGCACA 178 Query 35145 TTGGATCATTGCTTTATGGCGTAA 35168 ||| || | ||||| || ||||| Sbjct 179 TTGTATAGTCGCTTTGTGTCGTAA 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166693385619558