Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028961.1 Length=55094 Score E Sequences producing significant alignments: (Bits) Value seq6714 89.7 2e-13 >seq6714 Length=1758414 Score = 89.7 bits (98), Expect = 2e-13 Identities = 141/196 (72%), Gaps = 12/196 (6%) Strand=Plus/Minus Query 41251 CGTGTGGACGCTGCCTACCCAGCCGTTCGCCGGCGCGCACTTCGCGGTGTTCCCGCCCGC 41310 ||||||| | || | || ||||||||| | | ||| ||||||||| |||||||| | Sbjct 824457 CGTGTGGCCAATGGCGACGCAGCCGTTCTCTGACGCTCACTTCGCGACATTCCCGCCGGA 824398 Query 41311 ACT-GCCGCAGCGCTGCATCCTCGCGGGCTGC---AAACCCGGCGGCACGGTGCTCGACC 41366 ||| |||| |||||||||||||||| || ||| ||| |||||| ||| ||||||| Sbjct 824397 ACTAGCCG-AGCGCTGCATCCTCGCCGGGTGCCCGAAA---GGCGGCTTGGTACTCGACC 824342 Query 41367 CGTTTAACGGTTCGGGCACAACAGGACTCGCCGCACAACGCACCGGCCG--CCGCTACAT 41424 | || ||| | |||||||| | || | || | ||| ||| || |||||||| Sbjct 824341 CATTCGGCGGCGCTGGCACAACGGCCCTGGTTGCCCTTCGCCACGGTCGGCACGCTACAT 824282 Query 41425 CGGCATCGACATCAAC 41440 | ||||| ||||| Sbjct 824281 TG--ATCGAACTCAAC 824268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176147694644448