Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq9463 109 2e-19 >seq9463 Length=63583 Score = 109 bits (120), Expect = 2e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54921 TCGCCGATCTGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCA 54980 ||||| ||||| ||| || | ||| |||||| |||||||||| | ||| | |||| Sbjct 40951 TCGCCAGCCTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCA 40892 Query 54981 AGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGG 55040 |||| || |||||| |||| |||||||||| || || |||| || || ||||| | Sbjct 40891 TGGGCGCCACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCG 40832 Query 55041 GTGTCGATATTGGCTGCGGCATGATCGCGG 55070 | ||||| || |||||||||||||| |||| Sbjct 40831 GCGTCGACATCGGCTGCGGCATGATGGCGG 40802 Score = 84.2 bits (92), Expect = 8e-12 Identities = 220/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 55637 CACCACAACTACA-CGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAA 55695 |||||||||||| ||| | |||||| ||| |||| |||| | |||||||| Sbjct 40223 CACCACAACTACGTCGC-GCGGGAGCATCACTTCGGCAAGACGGTGTTCGTCACCCGCAA 40165 Query 55696 GGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTG 55755 ||| ||| | || |||||| | | |||| | || || |||||||||||| || | Sbjct 40164 GGGGGCGGTGCGGGCCGGCGAGGGCGAACTGGGCATCATCCCCGGCTCGATGGGCGCCCG 40105 Query 55756 TTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCAGCGCCGCACGGTGC 55815 |||| ||||| ||||||||| || | || |||| ||| | ||||||| || Sbjct 40104 CTCGTTCATCGTGCGCGGCAAGGGGAACGCGGACTCGTTCTGCACCTGCTCGCACGGCGC 40045 Query 55816 GGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTG---TTCACGGTCGACGACCTCG- 55871 ||||| | | |||| |||| ||||| | |||||||| || |||| || Sbjct 40044 CGGCCGGGCGATGAGCCGCAACGAGGC---CAAGCGGCGCTTCACGGTGGAGGACCACGT 39988 Query 55872 AGGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCG 55931 |||| | ||||| |||| | |||||||| || | | | ||||||| | || Sbjct 39987 CCGCGC-CACCGAGGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCGACGAAACGCCGA 39929 Query 55932 ACGCATACAAGCCGATCGACGTCGTGATG 55960 || |||||| ||||||| ||||||| Sbjct 39928 TGGCCTACAAGGACATCGACGCCGTGATG 39900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193792538729818