Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028978.1
Length=60609
Score E
Sequences producing significant alignments: (Bits) Value
seq9463 109 2e-19
>seq9463
Length=63583
Score = 109 bits (120), Expect = 2e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 54921 TCGCCGATCTGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCA 54980
||||| ||||| ||| || | ||| |||||| |||||||||| | ||| | ||||
Sbjct 40951 TCGCCAGCCTGCCGTTCATCCACAAGCACGTGGCGGTGATGCCCGACGTGCACTGGGGCA 40892
Query 54981 AGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGG 55040
|||| || |||||| |||| |||||||||| || || |||| || || ||||| |
Sbjct 40891 TGGGCGCCACCGTCGGCTCGGTCATCCCGACCGTCGGGGCGATCATCCCGGCGGCGGTCG 40832
Query 55041 GTGTCGATATTGGCTGCGGCATGATCGCGG 55070
| ||||| || |||||||||||||| ||||
Sbjct 40831 GCGTCGACATCGGCTGCGGCATGATGGCGG 40802
Score = 84.2 bits (92), Expect = 8e-12
Identities = 220/329 (67%), Gaps = 10/329 (3%)
Strand=Plus/Minus
Query 55637 CACCACAACTACA-CGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAA 55695
|||||||||||| ||| | |||||| ||| |||| |||| | ||||||||
Sbjct 40223 CACCACAACTACGTCGC-GCGGGAGCATCACTTCGGCAAGACGGTGTTCGTCACCCGCAA 40165
Query 55696 GGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTG 55755
||| ||| | || |||||| | | |||| | || || |||||||||||| || |
Sbjct 40164 GGGGGCGGTGCGGGCCGGCGAGGGCGAACTGGGCATCATCCCCGGCTCGATGGGCGCCCG 40105
Query 55756 TTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCAGCGCCGCACGGTGC 55815
|||| ||||| ||||||||| || | || |||| ||| | ||||||| ||
Sbjct 40104 CTCGTTCATCGTGCGCGGCAAGGGGAACGCGGACTCGTTCTGCACCTGCTCGCACGGCGC 40045
Query 55816 GGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTG---TTCACGGTCGACGACCTCG- 55871
||||| | | |||| |||| ||||| | |||||||| || |||| ||
Sbjct 40044 CGGCCGGGCGATGAGCCGCAACGAGGC---CAAGCGGCGCTTCACGGTGGAGGACCACGT 39988
Query 55872 AGGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCG 55931
|||| | ||||| |||| | |||||||| || | | | ||||||| | ||
Sbjct 39987 CCGCGC-CACCGAGGGCGTCGAATGCCGCAAGGACGCCGAGGTGATCGACGAAACGCCGA 39929
Query 55932 ACGCATACAAGCCGATCGACGTCGTGATG 55960
|| |||||| ||||||| |||||||
Sbjct 39928 TGGCCTACAAGGACATCGACGCCGTGATG 39900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193792538729818
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |