Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_028999.1
Length=309208
Score E
Sequences producing significant alignments: (Bits) Value
seq8939 102 2e-16
seq9314 84.2 4e-11
>seq8939
Length=223461
Score = 102 bits (112), Expect = 2e-16
Identities = 73/83 (88%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 294857 AATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTC 294916
|| ||||||||| || | |||||||||| || |||||||||||||||||||||||||||
Sbjct 46337 AAAATGGTGCCGGCACACGGATTCGAACT-GTGGACCTACTGATTACAAGTCAGTTGCTC 46279
Query 294917 TACCAGCTGAGCTATAACGGCAA 294939
||||| ||||||||| ||||||
Sbjct 46278 TACCAACTGAGCTATGCCGGCAA 46256
Score = 98.7 bits (108), Expect = 2e-15
Identities = 73/84 (87%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 294854 CTGAATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTG 294913
|| || ||||||||| || | |||||||||| || ||||||||||||||||||||||||
Sbjct 506 CTTAAGATGGTGCCGGCACACGGATTCGAACT-GTGGACCTACTGATTACAAGTCAGTTG 564
Query 294914 CTCTACCAGCTGAGCTATAACGGC 294937
|||||||| ||||||||| ||||
Sbjct 565 CTCTACCAACTGAGCTATGCCGGC 588
>seq9314
Length=31629
Score = 84.2 bits (92), Expect = 4e-11
Identities = 54/58 (93%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 294873 AGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACCAGCTGAGCTA 294930
|||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 412 AGGGATTCGAACCC-TGGACCTACTGATTAAAAGTCAGTTGCTCTACCGGCTGAGCTA 468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989143514420027
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |