Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq8939 102 2e-16 seq9314 84.2 4e-11 >seq8939 Length=223461 Score = 102 bits (112), Expect = 2e-16 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 294857 AATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTC 294916 || ||||||||| || | |||||||||| || ||||||||||||||||||||||||||| Sbjct 46337 AAAATGGTGCCGGCACACGGATTCGAACT-GTGGACCTACTGATTACAAGTCAGTTGCTC 46279 Query 294917 TACCAGCTGAGCTATAACGGCAA 294939 ||||| ||||||||| |||||| Sbjct 46278 TACCAACTGAGCTATGCCGGCAA 46256 Score = 98.7 bits (108), Expect = 2e-15 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 294854 CTGAATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTG 294913 || || ||||||||| || | |||||||||| || |||||||||||||||||||||||| Sbjct 506 CTTAAGATGGTGCCGGCACACGGATTCGAACT-GTGGACCTACTGATTACAAGTCAGTTG 564 Query 294914 CTCTACCAGCTGAGCTATAACGGC 294937 |||||||| ||||||||| |||| Sbjct 565 CTCTACCAACTGAGCTATGCCGGC 588 >seq9314 Length=31629 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 294873 AGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACCAGCTGAGCTA 294930 |||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||| Sbjct 412 AGGGATTCGAACCC-TGGACCTACTGATTAAAAGTCAGTTGCTCTACCGGCTGAGCTA 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989143514420027