Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq7272 226 5e-55 >seq7272 Length=98981 Score = 226 bits (250), Expect = 5e-55 Identities = 633/961 (66%), Gaps = 19/961 (2%) Strand=Plus/Minus Query 1577 CCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGG 1636 || || ||||| | ||||||| ||||| | | |||||||||||||| || | | |||| Sbjct 42044 CCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGG 41985 Query 1637 ATGGCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGA 1696 ||| |||| |||||||| |||||||| || || |||| |||||||||||||| Sbjct 41984 ATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAACTGCATGCGCTCCAGCATGCGG 41925 Query 1697 AACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTG 1756 |||||||| |||| | ||||| || || || ||| || || |||||| || Sbjct 41924 AACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCCGTA 41865 Query 1757 TGGGACGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGG 1816 ||| ||||| |||||||||||||| || ||| || || | | ||| || Sbjct 41864 TGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCCAAACGGCCGCAACGTGAAGGGC 41805 Query 1817 GCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGG 1876 ||| || ||| | ||| ||| | ||||||| |||| | |||| Sbjct 41804 TTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCAGCGCATCAGCGTGGACAGCGGG 41745 Query 1877 AATAC--CGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCAT 1934 || || ||| | | || ||||||||| ||||||| | |||||| | | ||||| | Sbjct 41744 AAAACAGCGAAGG--TGTCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCTCGT 41687 Query 1935 CACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGT 1994 | | ||| | || | ||| ||||||||||| ||||||| ||| | || | Sbjct 41686 CCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGCCGCCGCGCTGCGCAT 41627 Query 1995 CCTCAATAGTGACAATCTGCCGCCACTGTCC-GTCAGCGCAAA-GAAGCCCACCGGCGAG 2052 || | ||||||||||||||||| | || ||| ||| |||||| | | | | Sbjct 41626 CCAGCACCGTGACAATCTGCCGCCA-TATCTTGTCCTCGCCGGTGAAGCCTCCAGCCAGG 41568 Query 2053 CGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAA 2112 ||| || || | ||| | || |||||||| |||||||| |||||||| Sbjct 41567 TGCGAA-TGGCTCAGGTCCAGCTCTATGCGGTCCTTTT---TGGCGCGCTTCTTGTTGAT 41512 Query 2113 CAGCTCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTA 2172 | ||| | ||| | | || || |||| ||| || || || ||||| Sbjct 41511 GCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGAAAACAG 41452 Query 2173 AGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAA 2232 || |||| |||||| || |||||| || || || || | ||||| | || Sbjct 41451 CGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCCGTGAA 41392 Query 2233 ATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTT 2292 || || ||| || | |||||||| ||| || | ||||| | ||| |||||| Sbjct 41391 GTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCGGTGCG 41332 Query 2293 GGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCC 2352 || | ||||| || ||| |||| | ||||| ||| | | ||| || |||||||| Sbjct 41331 GGCGCTCGTGCCCAGGAAATACAGCGTGGCGCCATTGCTC---AGGACGATGGGGTCGCC 41275 Query 2353 GGTCAGGTCGACGTCAACCAGTCGC----GCAAACTGGATGATGTATTCCCGGAACACGT 2408 ||| |||| || | | | | |||||| ||||||||| | |||||| || | Sbjct 41274 CTTCAAATCGATATCG-CAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAAACAT 41216 Query 2409 AAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCA 2468 ||||||| |||||||| ||||||||||| || |||| ||||| || || | Sbjct 41215 GGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCATCAA 41156 Query 2469 GCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGC 2528 ||| ||||||||| ||||| |||| || || |||||||| ||||||||||| ||| Sbjct 41155 TCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATGGCGC 41096 Query 2529 G 2529 | Sbjct 41095 G 41095 Score = 134 bits (148), Expect = 3e-27 Identities = 267/390 (68%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 361 CGCCCATGAGCTGGAACGGTACGCGGTGTGCATCCATCAGGTCGGCGGCGCTGGCTTTCT 420 ||||||||||||| || |||||||| || ||| |||| || ||| | |||| Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174 Query 421 TGATGTTGAAAAAGTCATCCTTTGTGGCGACTTCGCTCAATGGCACGATTTTGATGCCGT 480 ||||||||||||| |||||||| | || | |||| | |||| | || |||| | | Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114 Query 481 CCGGTTTTCCGCCGGGAGCGTAGAAAAACAGGTTTTTAAAGTTGCCGA-GCCCTTTCGAG 539 | ||| |||||||| | | ||||||||| || || ||||| | |||||| || Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054 Query 540 TTACGCATCGCCTCGCGCAGCGATTCGA---CGTCGGTCGCGCTCTGCGCCGGGTCAGTC 596 | || |||| |||||||| || | |||| | || | || || || || || Sbjct 43053 AT-TTCAAGGCCTGGCGCAGCGCATCCACATCGTCTTTTGC-CACTTCG--GGATCGCTC 42998 Query 597 ACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTC 656 | ||| | |||||| || || || || || | ||||||| ||| || |||||||| Sbjct 42997 AGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTG 42938 Query 657 GCGGATTCATTCAGCCATGCGGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATC 716 || || ||||| ||||| ||||| | |||||| || || | ||||| || || || Sbjct 42937 GCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATT 42878 Query 717 TCCTGATTAATATCAGGCTCCAGCAGGTGG 746 ||||| | | ||| |||| || | |||| Sbjct 42877 TCCTGGTGCACATCGGGCTGGAGGATGTGG 42848 Score = 98.7 bits (108), Expect = 2e-16 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 14765 CGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCG--GTCGATA 14822 || || || ||||| ||||||||||| ||||| || | || | | | | ||||| | Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015 Query 14823 AGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATTCCGCG 14882 ||||||| | ||| | | ||||| || || |||||||||||||| ||||||| Sbjct 25014 AGCCCATGCACCCCAGCATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGCG 24955 Query 14883 AGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCGAACG 14942 | || || | ||||||||| | ||||| |||||| |||| || ||| Sbjct 24954 AACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAACA 24895 Query 14943 ACAAGGAGACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGGTTCCGC 15002 || || | || || ||||| || ||| | ||||||||||| ||||| || |||| Sbjct 24894 CCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCGC 24835 Query 15003 CACTGGAGAGCATGACCATGCGCCAGCGTATCACCGA 15039 | ||||| | || | |||||||| |||||||| Sbjct 24834 CGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95007007273810