Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_029003.2
Length=29733
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 226 5e-55
>seq7272
Length=98981
Score = 226 bits (250), Expect = 5e-55
Identities = 633/961 (66%), Gaps = 19/961 (2%)
Strand=Plus/Minus
Query 1577 CCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGG 1636
|| || ||||| | ||||||| ||||| | | |||||||||||||| || | | ||||
Sbjct 42044 CCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTTGTATTTCTCTGTCATCTGGCGG 41985
Query 1637 ATGGCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGA 1696
||| |||| |||||||| |||||||| || || |||| ||||||||||||||
Sbjct 41984 ATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAACTGCATGCGCTCCAGCATGCGG 41925
Query 1697 AACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTG 1756
|||||||| |||| | ||||| || || || ||| || || |||||| ||
Sbjct 41924 AACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTACAAGGCCCGCCGAGTCGCCCGTA 41865
Query 1757 TGGGACGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGG 1816
||| ||||| |||||||||||||| || ||| || || | | ||| ||
Sbjct 41864 TGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCCAAACGGCCGCAACGTGAAGGGC 41805
Query 1817 GCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGG 1876
||| || ||| | ||| ||| | ||||||| |||| | ||||
Sbjct 41804 TTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCAGCGCATCAGCGTGGACAGCGGG 41745
Query 1877 AATAC--CGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCAT 1934
|| || ||| | | || ||||||||| ||||||| | |||||| | | ||||| |
Sbjct 41744 AAAACAGCGAAGG--TGTCATCGACAAACCCGCACATGAGCAGGTTGTCCCATTCCTCGT 41687
Query 1935 CACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGT 1994
| | ||| | || | ||| ||||||||||| ||||||| ||| | || |
Sbjct 41686 CCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGATTGCAGCCGCCGCGCTGCGCAT 41627
Query 1995 CCTCAATAGTGACAATCTGCCGCCACTGTCC-GTCAGCGCAAA-GAAGCCCACCGGCGAG 2052
|| | ||||||||||||||||| | || ||| ||| |||||| | | | |
Sbjct 41626 CCAGCACCGTGACAATCTGCCGCCA-TATCTTGTCCTCGCCGGTGAAGCCTCCAGCCAGG 41568
Query 2053 CGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAA 2112
||| || || | ||| | || |||||||| |||||||| ||||||||
Sbjct 41567 TGCGAA-TGGCTCAGGTCCAGCTCTATGCGGTCCTTTT---TGGCGCGCTTCTTGTTGAT 41512
Query 2113 CAGCTCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTA 2172
| ||| | ||| | | || || |||| ||| || || || |||||
Sbjct 41511 GCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTGCAGGCTGCTGGGCGTGGAAAACAG 41452
Query 2173 AGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAA 2232
|| |||| |||||| || |||||| || || || || | ||||| | ||
Sbjct 41451 CGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCTGGCCACCTTCCACAGCTCCGTGAA 41392
Query 2233 ATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTT 2292
|| || ||| || | |||||||| ||| || | ||||| | ||| ||||||
Sbjct 41391 GTTGTTGACCCAAAAGAATTCATCGAAATAGAGATTGCCGTGGTACGACTGCGCGGTGCG 41332
Query 2293 GGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCC 2352
|| | ||||| || ||| |||| | ||||| ||| | | ||| || ||||||||
Sbjct 41331 GGCGCTCGTGCCCAGGAAATACAGCGTGGCGCCATTGCTC---AGGACGATGGGGTCGCC 41275
Query 2353 GGTCAGGTCGACGTCAACCAGTCGC----GCAAACTGGATGATGTATTCCCGGAACACGT 2408
||| |||| || | | | | |||||| ||||||||| | |||||| || |
Sbjct 41274 CTTCAAATCGATATCG-CAATGCTCCTTGGCAAACGCGATGATGTACTGCCGGAAAACAT 41216
Query 2409 AAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCA 2468
||||||| |||||||| ||||||||||| || |||| ||||| || || |
Sbjct 41215 GGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGATTGCGGCCCGTCTTCAGGGCATCAA 41156
Query 2469 GCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGC 2528
||| ||||||||| ||||| |||| || || |||||||| ||||||||||| |||
Sbjct 41155 TCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGATCTGGCGCGATTTGAGAATGGCGC 41096
Query 2529 G 2529
|
Sbjct 41095 G 41095
Score = 134 bits (148), Expect = 3e-27
Identities = 267/390 (68%), Gaps = 8/390 (2%)
Strand=Plus/Minus
Query 361 CGCCCATGAGCTGGAACGGTACGCGGTGTGCATCCATCAGGTCGGCGGCGCTGGCTTTCT 420
||||||||||||| || |||||||| || ||| |||| || ||| | ||||
Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174
Query 421 TGATGTTGAAAAAGTCATCCTTTGTGGCGACTTCGCTCAATGGCACGATTTTGATGCCGT 480
||||||||||||| |||||||| | || | |||| | |||| | || |||| | |
Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114
Query 481 CCGGTTTTCCGCCGGGAGCGTAGAAAAACAGGTTTTTAAAGTTGCCGA-GCCCTTTCGAG 539
| ||| |||||||| | | ||||||||| || || ||||| | |||||| ||
Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054
Query 540 TTACGCATCGCCTCGCGCAGCGATTCGA---CGTCGGTCGCGCTCTGCGCCGGGTCAGTC 596
| || |||| |||||||| || | |||| | || | || || || || ||
Sbjct 43053 AT-TTCAAGGCCTGGCGCAGCGCATCCACATCGTCTTTTGC-CACTTCG--GGATCGCTC 42998
Query 597 ACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTC 656
| ||| | |||||| || || || || || | ||||||| ||| || ||||||||
Sbjct 42997 AGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTG 42938
Query 657 GCGGATTCATTCAGCCATGCGGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATC 716
|| || ||||| ||||| ||||| | |||||| || || | ||||| || || ||
Sbjct 42937 GCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATT 42878
Query 717 TCCTGATTAATATCAGGCTCCAGCAGGTGG 746
||||| | | ||| |||| || | ||||
Sbjct 42877 TCCTGGTGCACATCGGGCTGGAGGATGTGG 42848
Score = 98.7 bits (108), Expect = 2e-16
Identities = 189/277 (68%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 14765 CGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCG--GTCGATA 14822
|| || || ||||| ||||||||||| ||||| || | || | | | | ||||| |
Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015
Query 14823 AGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATTCCGCG 14882
||||||| | ||| | | ||||| || || |||||||||||||| |||||||
Sbjct 25014 AGCCCATGCACCCCAGCATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGCG 24955
Query 14883 AGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCGAACG 14942
| || || | ||||||||| | ||||| |||||| |||| || |||
Sbjct 24954 AACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAACA 24895
Query 14943 ACAAGGAGACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGGTTCCGC 15002
|| || | || || ||||| || ||| | ||||||||||| ||||| || ||||
Sbjct 24894 CCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCGC 24835
Query 15003 CACTGGAGAGCATGACCATGCGCCAGCGTATCACCGA 15039
| ||||| | || | |||||||| ||||||||
Sbjct 24834 CGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95007007273810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |