Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq7053 93.3 5e-14 seq11739 87.8 2e-12 seq9470 87.8 2e-12 >seq7053 Length=464797 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555 ||||| || || ||||||||||| |||||||||| || | ||||| ||| | || ||| Sbjct 70344 GTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATATCGGCAGAGCGC 70403 Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACAC 78615 ||||| ||| ||||| || || | | || ||||||||| | |||||||| Sbjct 70404 TGATAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAACAGGCAGTGACAG 70463 Query 78616 GGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATG 78666 || |||| ||||||| |||| | |||||||| || ||||||||| Sbjct 70464 GGCGGCAACGCCATTTCGTCCACCAGCGCCGGGTTCCACGCCGAAACGATG 70514 >seq11739 Length=237542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 253/386 (66%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 78364 AGCGGTAACGGTTCACGTTCCGGTTTCAACAGTTCTTTTGCTTGTTCAATTGCGTTTTTG 78423 || ||||| || |||||| ||| ||| | |||||||||||||| ||| Sbjct 8751 AGTGGTAAGGGCTCACGT----GTT--AACTGAAGTTTTGCTTGTTCAAAATGGTTAACA 8804 Query 78424 TAGATATGAACATCACCACCTGTCCATACCAGATCACCAACTTCGTACCCGCAAATATCA 78483 || | ||| |||||| || ||||| || | |||||| || | | || |||| | | Sbjct 8805 TATAAATGTGTATCACCGCCAGTCCAGACAAAATCACCTACGCCTAAACCACAAACTTGA 8864 Query 78484 GCGATAATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACA 78543 || | ||||| ||||| ||||| ||| ||| ||||| || |||| ||||||||| ||| Sbjct 8865 GCAACCATATGAGTCAGTAGAGCATAGCTGGCAATATTAAATGGCACCCCTAAGAAAACA 8924 Query 78544 TCAACCGAACGCTGATACCACTGTAGAGACAGTTTACCGT--TGATTACGACGAACTGGA 78601 || | ||| ||||| || ||||| || || | ||| || | || |||| Sbjct 8925 TCTGCACTACGTTGATAAAGTTGGCAAGACAACTTTCCATCCTGA--ACAAAAAATTGGA 8982 Query 78602 AGAAACAGTGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAA 78661 | ||| ||| || || | || || | |||| | ||| |||||||| | || | Sbjct 8983 ATAAAGTGTGGCATGGCGGTAAGGCAACTTTACCTGCTTCATTTGGGTTCCAGCCAGACA 9042 Query 78662 CGATGATCCCGCGATCGTCTGGCGTGGTTTTCAGTTCGTTGACGATCCGAGCAATCTGGT 78721 | || | | || || ||| |||| || | ||| ||||| | || | || |||| Sbjct 9043 CAATCAAACGACGTGAGTTTGGATTGGTCTTGATTTCATTGACCAACCAACTGATTTGGT 9102 Query 78722 CAACGCTGTGATTTCCATACAAATCA 78747 ||| | | |||| || ||||| || Sbjct 9103 CAAAACCATCATTTTCAAACAAACCA 9128 >seq9470 Length=127963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555 ||||| || |||||||||||||| |||||||||| || | ||| | || |||| ||| Sbjct 52708 GTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGGTCGGCCGAGCGC 52767 Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACAC 78615 || || | | |||||||| |||| |||| ||||||||| | ||||| ||| Sbjct 52768 TGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAACAGGCAGTGGCAC 52827 Query 78616 GGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATG 78666 || ||| ||||| | || | || | |||||||| || || |||||| Sbjct 52828 GGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACGATG 52878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568366591950720