Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq7053 93.3 5e-14
seq11739 87.8 2e-12
seq9470 87.8 2e-12
>seq7053
Length=464797
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555
||||| || || ||||||||||| |||||||||| || | ||||| ||| | || |||
Sbjct 70344 GTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACGCCGAGGAAGATATCGGCAGAGCGC 70403
Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACAC 78615
||||| ||| ||||| || || | | || ||||||||| | ||||||||
Sbjct 70404 TGATAGAGCTGGCAGGACAGCTTTCCATCGGAAACATAGAACTGGAACAGGCAGTGACAG 70463
Query 78616 GGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATG 78666
|| |||| ||||||| |||| | |||||||| || |||||||||
Sbjct 70464 GGCGGCAACGCCATTTCGTCCACCAGCGCCGGGTTCCACGCCGAAACGATG 70514
>seq11739
Length=237542
Score = 87.8 bits (96), Expect = 2e-12
Identities = 253/386 (66%), Gaps = 10/386 (3%)
Strand=Plus/Plus
Query 78364 AGCGGTAACGGTTCACGTTCCGGTTTCAACAGTTCTTTTGCTTGTTCAATTGCGTTTTTG 78423
|| ||||| || |||||| ||| ||| | |||||||||||||| |||
Sbjct 8751 AGTGGTAAGGGCTCACGT----GTT--AACTGAAGTTTTGCTTGTTCAAAATGGTTAACA 8804
Query 78424 TAGATATGAACATCACCACCTGTCCATACCAGATCACCAACTTCGTACCCGCAAATATCA 78483
|| | ||| |||||| || ||||| || | |||||| || | | || |||| | |
Sbjct 8805 TATAAATGTGTATCACCGCCAGTCCAGACAAAATCACCTACGCCTAAACCACAAACTTGA 8864
Query 78484 GCGATAATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACA 78543
|| | ||||| ||||| ||||| ||| ||| ||||| || |||| ||||||||| |||
Sbjct 8865 GCAACCATATGAGTCAGTAGAGCATAGCTGGCAATATTAAATGGCACCCCTAAGAAAACA 8924
Query 78544 TCAACCGAACGCTGATACCACTGTAGAGACAGTTTACCGT--TGATTACGACGAACTGGA 78601
|| | ||| ||||| || ||||| || || | ||| || | || ||||
Sbjct 8925 TCTGCACTACGTTGATAAAGTTGGCAAGACAACTTTCCATCCTGA--ACAAAAAATTGGA 8982
Query 78602 AGAAACAGTGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAA 78661
| ||| ||| || || | || || | |||| | ||| |||||||| | || |
Sbjct 8983 ATAAAGTGTGGCATGGCGGTAAGGCAACTTTACCTGCTTCATTTGGGTTCCAGCCAGACA 9042
Query 78662 CGATGATCCCGCGATCGTCTGGCGTGGTTTTCAGTTCGTTGACGATCCGAGCAATCTGGT 78721
| || | | || || ||| |||| || | ||| ||||| | || | || ||||
Sbjct 9043 CAATCAAACGACGTGAGTTTGGATTGGTCTTGATTTCATTGACCAACCAACTGATTTGGT 9102
Query 78722 CAACGCTGTGATTTCCATACAAATCA 78747
||| | | |||| || ||||| ||
Sbjct 9103 CAAAACCATCATTTTCAAACAAACCA 9128
>seq9470
Length=127963
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555
||||| || |||||||||||||| |||||||||| || | ||| | || |||| |||
Sbjct 52708 GTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAACAGGTCGGCCGAGCGC 52767
Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACAC 78615
|| || | | |||||||| |||| |||| ||||||||| | ||||| |||
Sbjct 52768 TGGTAAAGCAGGCAGGACAGTTTTCCGTCCGCCACGAAGAACTGGAACAGGCAGTGGCAC 52827
Query 78616 GGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATG 78666
|| ||| ||||| | || | || | |||||||| || || ||||||
Sbjct 52828 GGCGGCAGGGCCATGTCGTCGACGTCGGCCGGGTTCCAGGCCGAGACGATG 52878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568366591950720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |