Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq7272 111 3e-20 >seq7272 Length=98981 Score = 111 bits (122), Expect = 3e-20 Identities = 310/473 (66%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 329 TTCGTTGATGGAAAACACCTTCGCCGCTTTCTCTACGTCGCCGAAGCCACCGGAGTTATT 388 ||||||| | |||||| || || || | || |||||||||||||| | || Sbjct 43301 TTCGTTGCGCGCGAACACCCGTGCAGCGTTGACCACATCGCCGAAGCCACCTGCATTGGC 43242 Query 389 CGGCATTACCCCCATCAGAACGGGCGGCACACGGTGCGCGGCTAACAGGTCGTCGCGGGT 448 ||||| || ||||| || || ||||| ||||| ||||| || |||| |||||| | Sbjct 43241 CGGCACCACGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCT 43182 Query 449 GGCGTCTTTGATGCCGGTAAACTCATCCTTCGCCGCCACCTGGCTGAACGGCATAATTTG 508 ||| |||||| | ||| |||||||| |||||| ||| || || |||| | ||| Sbjct 43181 CACGTTCTTGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTG 43122 Query 509 CAGGCCGTCTTTTTTCCCGCCCGCCGCGTAGACAAACAGGTTTTTAAAAGCACCGTTGCC 568 | | | | | ||| ||||| | || | || |||||| || ||| || |||| Sbjct 43121 GATGGCTTTCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCC 43062 Query 569 GCGAGCATCTTTCAGCGACTTTTTAAGCTTTTCCACATCGTTATTATTCGCCAC--CGGG 626 | | ||||| | || ||| ||||||||| | || ||||| |||| Sbjct 43061 CTTGGAAGATTTCAAGGCCTGGCGCAGCGCATCCACATCG---TCTTTTGCCACTTCGGG 43005 Query 627 -TCAGTGAGGTAGACGATCACACCCGCATGACTGCCGTTAATGTAGTAGTTGCGGCGGAA 685 || | || |||| ||| || ||||| || || || |||| || ||| || || Sbjct 43004 ATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAA 42945 Query 686 CACCGTTGCTTCACCGTTCAGCATGGCGCTTTGTAGCGCGGCCAGATATTCCGGCGCGCC 745 || ||| || | || ||| |||| || ||||||||||| || | |||| || Sbjct 42944 CAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCC 42885 Query 746 GTAGATCTCCTGGTG-----CGGGCTGGGGTTCTTGATCTGGCAGACGCTGCC 793 ||||| |||||||| |||||||| | ||| ||||| | |||||| Sbjct 42884 ATAGATTTCCTGGTGCACATCGGGCTGGAG-----GATGTGGCAAATGCTGCC 42837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107088046488018