Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_029046.1
Length=50827
Score E
Sequences producing significant alignments: (Bits) Value
seq6714 1058 0.0
seq3090 194 5e-45
seq8050 96.9 1e-15
seq14232 95.1 4e-15
seq10221 82.4 2e-11
seq8280 82.4 2e-11
>seq6714
Length=1758414
Score = 1058 bits (1172), Expect = 0.0
Identities = 1093/1438 (76%), Gaps = 4/1438 (0%)
Strand=Plus/Minus
Query 22624 CTCCGGACCTGACGGCGCCCCGATACAGACCGAGACAAGAACATGGCGGGAAGTGCTGCG 22683
||| || || || || | |||||| ||||| || | | |||||||| || ||||||||
Sbjct 814805 CTCAGGTCCAGAAGGTGGCCCGATCCAGACAGAAAGCCGGACATGGCGCGACGTGCTGCG 814746
Query 22684 CAGCGAAAAGAGCTAGACGCCACCACCCATCTTACCAACCCTGCGCTTCACGAGTTTTGG 22743
|||||| ||||| |||| | || ||| || || |||||||| |||||| | || ||||||
Sbjct 814745 CAGCGAGAAGAGTTAGAGGACAGCACGCACCTCACCAACCCGGCGCTTTATGACTTTTGG 814686
Query 22744 GAACAGGTCTTCCTCGGGCAG-GCAGACATCGCGGTTCTCCACGGTGGGCGCTCAAGCTC 22802
||| |||| |||||||| ||| | ||||| || || || |||||||| || || || ||
Sbjct 814685 GAAGAGGTGTTCCTCGG-CAGCGTCGACATTGCTGTCCTGCACGGTGGTCGATCCAGTTC 814627
Query 22803 AAAGACGCGAGACACCGCGTGCCAGCTGGTGCGCCTGGTCGACCACGTCGGCGTCAAGAT 22862
|||||| | || ||||| |||||| ||||| | ||| || | ||| | ||||||||
Sbjct 814626 GAAGACGAGGGATACCGCCTGCCAGTTGGTGAGGCTGATCAATCACCTGACTGTCAAGAT 814567
Query 22863 GCGGGTTCTCTGCATCCGTCGCTTCCAAAACCGCATTCAGGACTCGGTCTATACCGAACT 22922
||| ||||| |||||||| ||||| || || ||||||||||| |||||||| || |||||
Sbjct 814566 GCGCGTTCTTTGCATCCGGCGCTTTCAGAATCGCATTCAGGAATCGGTCTACACTGAACT 814507
Query 22923 GAAGTGGGCGATCGCTCATCTCGGGCTGAGCAAAGCCTTCGACGTCCAGAAGACGACGAT 22982
||||||||| || |||||||||||| || || ||||||||| ||||||||||||
Sbjct 814506 GAAGTGGGCCATAAATCATCTCGGGCTCAGTGCCGCGTTCGACGTCATGAAGACGACGAT 814447
Query 22983 CATTCATCGCAGGACCGGCGCGGAGTTCATCTTCTACGGCATCGAGCGGAACCTTGAGGA 23042
| | || |||||| | ||||||||||||||||| |||||||| ||||| || ||
Sbjct 814446 CGTCCACAAGGCGACCGGTTCCGAGTTCATCTTCTACGGGATCGAGCGAAACCTCGACGA 814387
Query 23043 CATCAAGGGCACGTCCGACGTCGACATCCTGTGGGTGGAAGAAGCCGAGAAGCTGACCGA 23102
|||||| |||||||| ||| |||||||||| |||||||| || || ||||| || || ||
Sbjct 814386 CATCAAAGGCACGTCGGACATCGACATCCTTTGGGTGGAGGAGGCGGAGAAACTTACGGA 814327
Query 23103 GGAGCAATGGACGGTCATCGGCCCGACCATCCGCAAGGAAGACAGCCTGGCGATCCTGCT 23162
||||| ||| || |||| ||||| |||||||| || |||||||| ||||||||||
Sbjct 814326 AGAGCAGTGGGTCGTTATCGCGCCGACGATCCGCAAAGAGGACAGCCTCACGATCCTGCT 814267
Query 23163 CTTCAACCCGAAGCTGGTCACCGACTACGTCTGGAAGAACTTCGTCGTCAACACGCCGCC 23222
|||||| ||||| | || || ||||| || |||||||| ||||| || | ||| ||
Sbjct 814266 CTTCAATCCGAAATTCGTTACGGACTATGTGTGGAAGAATTTCGTTGTAAGCACCCCCGA 814207
Query 23223 GCACTGCGTCGTCAAACAGATCAACTACACCTCGAACCCGTTCCTATCCTCCAAGGCGCT 23282
||||||| | ||| | ||||| ||||| | ||||||||||| || ||||||
Sbjct 814206 GCACTGCCTAGTCCACAAGATCGACTACTCGGAAAACCCGTTCCTCTCGGACAAGGCCAA 814147
Query 23283 GCGCGATATCGCGGCGATGCAGGAACGTGACCCGGAGTTGTTCGAGCACGTCTATCGCGG 23342
|||||| || ||||| ||||| || || || || ||| |||||||||||| || | ||
Sbjct 814146 GCGCGACATTGCGGCAATGCAAGAGCGCGAGCCTGAGAAGTTCGAGCACGTTTACGGTGG 814087
Query 23343 CGTGCCGCTCGGCGACAGCGAGCTTTCGATCTTCAAGCGCCGCTGGCTGGATGCTTGCAT 23402
||| || |||||||| ||||||||||||||||||||||| || ||||||||||| ||| |
Sbjct 814086 CGTACCACTCGGCGATAGCGAGCTTTCGATCTTCAAGCGGCGTTGGCTGGATGCCTGCGT 814027
Query 23403 TGACGCTGACAAGGTCCTGAAGGTCAGCCTAGCCGGCCGCAACATCATCGGCTTTGACCC 23462
||| || | | |||||||| |||| | ||||||| || | |||||||| || ||
Sbjct 814026 TGATGCGCATACCGTCCTGAATGTCACGTTGACCGGCCGGAATACGATCGGCTTCGATCC 813967
Query 23463 CGCCGACGACGGCGAGGACAATAGCGCGACCGCGGACAAGATCGATGGCGTCTTCGTTGA 23522
||||| ||||||||||| ||| |||| || || |||||||||| ||| | ||| | ||
Sbjct 813966 TGCCGATGACGGCGAGGATAATTGCGCCACTGCCGACAAGATCGGAGGCATATTCTTCGA 813907
Query 23523 CGCCGAGGACTGGGCATCCGGAAAGGACGAGCTCGTCCAGAACGCCAAGAAGGTGTGGGC 23582
|||||| ||||||||||| || ||||| || || || |||||||||||| ||| |||||
Sbjct 813906 CGCCGAAGACTGGGCATCTGGCAAGGATGAACTTGTTCAGAACGCCAAGCGGGTTTGGGC 813847
Query 23583 CAAGGCAAAGCACGCCGGTGCGACCGTCTCCTATGACACGATCGGCGTCGGCGCCTTTNN 23642
||| || || | | || ||||| ||||| || ||||||||||| || || || ||
Sbjct 813846 CAAAGCCAAACTCATGGGAGCGACAGTCTCTTACGACACGATCGGTGTGGGTGCTTTCGT 813787
Query 23643 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCAGCGTCGAGCATTTCGCATT 23702
||| | || |||| | ||||||
Sbjct 813786 CGGTGGCTACATCGATGAGCAGAACCGTGAAAACCAAGCGAAGGTTCAGCACTACGCATT 813727
Query 23703 CCACGCCGGCGGCGCGGTCATGGACCCGGACGAGCCGAGCGATGCGCAGAAT-GCCAACA 23761
||| |||||||||||||| || || || ||||||||||| | | ||| | ||| |
Sbjct 813726 CCATGCCGGCGGCGCGGTGGAAGATCCTGATAAGCCGAGCGATCCCTACAATCGGCAA-A 813668
Query 23762 GCCCGCTCAACAAGGACGAGTACCTGAACCTGAAGGCGCAGGCCTGGGCCAATACCGCGC 23821
|||||||||||||||||||||| ||||||| ||||| ||||| |||||||| || || |
Sbjct 813667 GCCCGCTCAACAAGGACGAGTATCTGAACCGCAAGGCACAGGCGTGGGCCAACACGGCTC 813608
Query 23822 GTCGAGCCATGCTGACATTCAACGCTGTGGCCCGTGGCCACCCGATCAAGCCGGAGGACG 23881
| || || ||| |||| ||||| || ||| | || |||||| | |||||||| |||||||
Sbjct 813607 GCCGCGCGATGTTGACGTTCAATGCGGTGACGCGGGGCCACGCCATCAAGCCTGAGGACG 813548
Query 23882 TCCTGTCCTTCTCCTCGGCCATGGGCGTCAAGAAGCTGGATGCGCTCTTCACCGAGCTTT 23941
| || || ||||| |||| ||||| || || || || || || ||||||||||| |
Sbjct 813547 TTCTATCGTTCTCTTCGGGGATGGGTGTTGCCAAACTCGACGCACTATTCACCGAGCTAT 813488
Query 23942 GCGTCCCTTGGTGGGTCGAGAGCGAAGGCAAGAAGCGGGTCGTGCCGAAACTGAAGCTCA 24001
|||| || |||||||| || | ||| ||||| || |||||||||||||| |||||||||
Sbjct 813487 GCGTGCCGTGGTGGGTTGAAACCGAGGGCAAAAAACGGGTCGTGCCGAAGGTGAAGCTCA 813428
Query 24002 AGAAGGACTTGGGCGTCAAATCTCACAACCTCGCTGACGCGGTGATCGCAGCGGACAA 24059
|||||||| ||||||| || ||||||||||| || || || |||||||| ||||||||
Sbjct 813427 AGAAGGACCTGGGCGTGAAGTCTCACAACCTGGCGGATGCTGTGATCGCTGCGGACAA 813370
Score = 87.8 bits (96), Expect = 6e-13
Identities = 120/164 (73%), Gaps = 4/164 (2%)
Strand=Plus/Plus
Query 18132 GAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGTC 18191
|| ||| | || |||||| ||||| ||||| | || |||| || ||| || | || ||
Sbjct 592341 GAAATCACTGAAATCACCACCGGCCTGAAGGCCCTGGCCAAGGAACTCAATGTTCCCATC 592400
Query 18192 GTTTTGCTGTCGCAGCTTAATCGAG-CA-GTCGAGAGCAGAGAGGATAAGCGACCTCTTC 18249
| ||||||||||| ||| | || ||||| ||| | || || ||||| || | |
Sbjct 592401 ATCGCACTGTCGCAGCT--GTCGCGTCAGGTCGAAAGCCGTGACGACAAGCGCCCGCAGC 592458
Query 18250 TCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGAC 18293
| || ||||||||||| || || |||||||||||||||| |||
Sbjct 592459 TGTCGGACCTTCGCGAATCGGGCTCGATCGAGCAGGACGCGGAC 592502
>seq3090
Length=9051
Score = 194 bits (214), Expect = 5e-45
Identities = 297/418 (71%), Gaps = 4/418 (1%)
Strand=Plus/Minus
Query 10499 ATGGCTTTCTCAGTATCCAGAGCACCTTCCCAATGAT-CGAAACATCTTCTCCCTCTGTG 10557
||||||| |||| ||||||||| |||||||| ||||| |||| | ||| || |||
Sbjct 4618 ATGGCTTCCTCAATATCCAGAGAACCTTCCCGATGATGCGAATGCT-TTCGCCAA-TGTT 4561
Query 10558 CTTT-CGTAGAGGAGAATTGGTTCCTGGTGAGCTGGGTCAGTGCTTTCCGGCCATAGTTC 10616
|||| | | |||| ||||| || || || ||||||||| ||||||||||||| || ||
Sbjct 4560 CTTTTCATTCAGGATGATTGGCTCTTGATGGGCTGGGTCATTGCTTTCCGGCCAAAGCTC 4501
Query 10617 AAAGCCCTTGGCGGTACGTCGAACACGTTTGGCCGTCCTCTGGACCATTTGACCGTAGTA 10676
|||| ||||| || |||||||| ||||| || | | || ||| ||||| | |
Sbjct 4500 GTAGCCATTGGCTGTCATCCGAACACGCTTGGCTGTACGTTCGATCATCTGACCTTCAAA 4441
Query 10677 CTTGCGACGCTCGACGATCACGAGGTCGTTCTCGTTAATCTCCTCGACGGCCTTGATCAC 10736
|| ||||| || ||||| || |||| || | || || || |||| |||| |
Sbjct 4440 GCGGCTTCGCTCCACAATCACCAGATCGTCGGCGCTGATATCGACGCGGGCCATGATGAT 4381
Query 10737 ATCGAGGCATACAAGGATGTCGCCATGTGATGCGACTTTGTTCAGGCAGTTTCCGTCTAC 10796
| ||||| ||||| ||||||||| | || | ||||| |||||||| || || |
Sbjct 4380 GTTCAGGCACACAAGTCGGTCGCCATGAGCAGCAATCTTGTTGAGGCAGTTCCCTTCGAT 4321
Query 10797 GCGAAGCCCGAATTGCCAGGCGGCGGGATACCCGCTGAGACTCGGGACAACTTCCATGTC 10856
|| | || ||||| || | |||||||||| | ||| || || | |||| |||
Sbjct 4320 CTTTAGAGCAAACTGCCATTCGACTGGATACCCGCCCACACTAGGCACGAATTCCTCGTC 4261
Query 10857 CTCATATGTGAAATCCATTTCATCAACATCCATCCATGTGTTAGCGGCGACCTTGCCA 10914
||||||| ||| ||||| || ||||| |||||| | || ||||| |||||||||
Sbjct 4260 CTCATATCCGAAGTCCATATCTTCAACGCTCATCCAGCTATTCGCGGCCACCTTGCCA 4203
>seq8050
Length=287393
Score = 96.9 bits (106), Expect = 1e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 18132 GAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGTC 18191
|| ||| || |||||||| | ||| | ||| |||| | || || ||| | || | ||
Sbjct 96458 GAAATCACCCAGATCACCACGGGCCTCAAGGCGCTGGGCAAGGAACTCAACGTCCCGATC 96399
Query 18192 GTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCTTCTC 18251
| |||||| ||||| || || || || ||| | || || ||||| || | ||
Sbjct 96398 ATCGCGCTGTCACAGCTCTCCCGTGCGGTGGAAAGCCGCGAAGACAAGCGTCCGCAGCTT 96339
Query 18252 TCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGTTC 18311
|| ||||| || || ||||| | |||||||||||||||||| || | |||| |||||
Sbjct 96338 TCCGACCTGCGTGAATCCGGCTCCATCGAGCAGGACGCCGACGTGGTGCTGTTCGTGTTC 96279
Query 18312 CGTGAGGCCTACTACCTC 18329
||||||| || ||| ||
Sbjct 96278 CGTGAGGAATATTACGTC 96261
Score = 86.0 bits (94), Expect = 2e-12
Identities = 47/47 (100%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 6 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATT 52
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257360 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATT 257314
>seq14232
Length=72504
Score = 95.1 bits (104), Expect = 4e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18122 TCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGA 18181
||| ||||| || || | || || || || |||||| || | || | || || |
Sbjct 61762 TCGCGTCAACGAAATTTCGGAAATTTCCCGTGGTTTGAAGACGTTGGCGAAGGAACTTCA 61821
Query 18182 TATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCG 18241
| || |||| | |||||||||||| | || || || || | ||||| |||||
Sbjct 61822 TGTCCCCGTGCTGGCGCTGTCGCAGCTCAGCCGTGCGGTGGAACAACGCGAGGACAAGCG 61881
Query 18242 ACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGC 18301
|| | || || ||||||||||| || || |||||||||||||||| |||||| ||
Sbjct 61882 TCCGCAGCTGTCCGACCTTCGCGAATCGGGCTCGATCGAGCAGGACGCGGACATGGTCTG 61941
Query 18302 GTTCTTGTTCCGTGAGG 18318
|||| ||||||| ||||
Sbjct 61942 GTTCGTGTTCCGCGAGG 61958
>seq10221
Length=130382
Score = 82.4 bits (90), Expect = 2e-11
Identities = 158/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 18113 CAGCGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAG 18172
|| || ||| || || | ||| || | |||||||| ||| | ||| | || ||||
Sbjct 117960 CAACGCCAACCGCGTGCAGGAGGTCAGCCAGATCACCATGGGCCTCAAGGCCCTGGCCAA 117901
Query 18173 AGAGCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAG-AGCAG 18229
||||| || | ||| | ||||||||||| ||| | ||| ||||| ||| |
Sbjct 117900 GGAGCTGAGCGTCCCGGTCATCGCCCTGTCGCAGCTG--TCGCGTCAGGTCGAGCAGC-G 117844
Query 18230 AGAGGATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGC 18289
|| || ||||| || | || || ||||| || || ||||| ||||||||||||||||
Sbjct 117843 CGACGACAAGCGGCCGCAGCTTTCCGACCTGCGTGAATCCGGCTCGATCGAGCAGGACGC 117784
Query 18290 CGACATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCGAACGCG 18336
||||||| || |||| | | || || |||||| |||| ||||
Sbjct 117783 CGACATGGTCTGGTTCGTCTATCGCGAAAGCTACTATCTCGGCCGCG 117737
>seq8280
Length=144189
Score = 82.4 bits (90), Expect = 2e-11
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 6 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTTTC 55
||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 40622 CTGGGGGGCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTCTC 40573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 162495736401062
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