Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq6714 1058 0.0 seq3090 194 5e-45 seq8050 96.9 1e-15 seq14232 95.1 4e-15 seq10221 82.4 2e-11 seq8280 82.4 2e-11 >seq6714 Length=1758414 Score = 1058 bits (1172), Expect = 0.0 Identities = 1093/1438 (76%), Gaps = 4/1438 (0%) Strand=Plus/Minus Query 22624 CTCCGGACCTGACGGCGCCCCGATACAGACCGAGACAAGAACATGGCGGGAAGTGCTGCG 22683 ||| || || || || | |||||| ||||| || | | |||||||| || |||||||| Sbjct 814805 CTCAGGTCCAGAAGGTGGCCCGATCCAGACAGAAAGCCGGACATGGCGCGACGTGCTGCG 814746 Query 22684 CAGCGAAAAGAGCTAGACGCCACCACCCATCTTACCAACCCTGCGCTTCACGAGTTTTGG 22743 |||||| ||||| |||| | || ||| || || |||||||| |||||| | || |||||| Sbjct 814745 CAGCGAGAAGAGTTAGAGGACAGCACGCACCTCACCAACCCGGCGCTTTATGACTTTTGG 814686 Query 22744 GAACAGGTCTTCCTCGGGCAG-GCAGACATCGCGGTTCTCCACGGTGGGCGCTCAAGCTC 22802 ||| |||| |||||||| ||| | ||||| || || || |||||||| || || || || Sbjct 814685 GAAGAGGTGTTCCTCGG-CAGCGTCGACATTGCTGTCCTGCACGGTGGTCGATCCAGTTC 814627 Query 22803 AAAGACGCGAGACACCGCGTGCCAGCTGGTGCGCCTGGTCGACCACGTCGGCGTCAAGAT 22862 |||||| | || ||||| |||||| ||||| | ||| || | ||| | |||||||| Sbjct 814626 GAAGACGAGGGATACCGCCTGCCAGTTGGTGAGGCTGATCAATCACCTGACTGTCAAGAT 814567 Query 22863 GCGGGTTCTCTGCATCCGTCGCTTCCAAAACCGCATTCAGGACTCGGTCTATACCGAACT 22922 ||| ||||| |||||||| ||||| || || ||||||||||| |||||||| || ||||| Sbjct 814566 GCGCGTTCTTTGCATCCGGCGCTTTCAGAATCGCATTCAGGAATCGGTCTACACTGAACT 814507 Query 22923 GAAGTGGGCGATCGCTCATCTCGGGCTGAGCAAAGCCTTCGACGTCCAGAAGACGACGAT 22982 ||||||||| || |||||||||||| || || ||||||||| |||||||||||| Sbjct 814506 GAAGTGGGCCATAAATCATCTCGGGCTCAGTGCCGCGTTCGACGTCATGAAGACGACGAT 814447 Query 22983 CATTCATCGCAGGACCGGCGCGGAGTTCATCTTCTACGGCATCGAGCGGAACCTTGAGGA 23042 | | || |||||| | ||||||||||||||||| |||||||| ||||| || || Sbjct 814446 CGTCCACAAGGCGACCGGTTCCGAGTTCATCTTCTACGGGATCGAGCGAAACCTCGACGA 814387 Query 23043 CATCAAGGGCACGTCCGACGTCGACATCCTGTGGGTGGAAGAAGCCGAGAAGCTGACCGA 23102 |||||| |||||||| ||| |||||||||| |||||||| || || ||||| || || || Sbjct 814386 CATCAAAGGCACGTCGGACATCGACATCCTTTGGGTGGAGGAGGCGGAGAAACTTACGGA 814327 Query 23103 GGAGCAATGGACGGTCATCGGCCCGACCATCCGCAAGGAAGACAGCCTGGCGATCCTGCT 23162 ||||| ||| || |||| ||||| |||||||| || |||||||| |||||||||| Sbjct 814326 AGAGCAGTGGGTCGTTATCGCGCCGACGATCCGCAAAGAGGACAGCCTCACGATCCTGCT 814267 Query 23163 CTTCAACCCGAAGCTGGTCACCGACTACGTCTGGAAGAACTTCGTCGTCAACACGCCGCC 23222 |||||| ||||| | || || ||||| || |||||||| ||||| || | ||| || Sbjct 814266 CTTCAATCCGAAATTCGTTACGGACTATGTGTGGAAGAATTTCGTTGTAAGCACCCCCGA 814207 Query 23223 GCACTGCGTCGTCAAACAGATCAACTACACCTCGAACCCGTTCCTATCCTCCAAGGCGCT 23282 ||||||| | ||| | ||||| ||||| | ||||||||||| || |||||| Sbjct 814206 GCACTGCCTAGTCCACAAGATCGACTACTCGGAAAACCCGTTCCTCTCGGACAAGGCCAA 814147 Query 23283 GCGCGATATCGCGGCGATGCAGGAACGTGACCCGGAGTTGTTCGAGCACGTCTATCGCGG 23342 |||||| || ||||| ||||| || || || || ||| |||||||||||| || | || Sbjct 814146 GCGCGACATTGCGGCAATGCAAGAGCGCGAGCCTGAGAAGTTCGAGCACGTTTACGGTGG 814087 Query 23343 CGTGCCGCTCGGCGACAGCGAGCTTTCGATCTTCAAGCGCCGCTGGCTGGATGCTTGCAT 23402 ||| || |||||||| ||||||||||||||||||||||| || ||||||||||| ||| | Sbjct 814086 CGTACCACTCGGCGATAGCGAGCTTTCGATCTTCAAGCGGCGTTGGCTGGATGCCTGCGT 814027 Query 23403 TGACGCTGACAAGGTCCTGAAGGTCAGCCTAGCCGGCCGCAACATCATCGGCTTTGACCC 23462 ||| || | | |||||||| |||| | ||||||| || | |||||||| || || Sbjct 814026 TGATGCGCATACCGTCCTGAATGTCACGTTGACCGGCCGGAATACGATCGGCTTCGATCC 813967 Query 23463 CGCCGACGACGGCGAGGACAATAGCGCGACCGCGGACAAGATCGATGGCGTCTTCGTTGA 23522 ||||| ||||||||||| ||| |||| || || |||||||||| ||| | ||| | || Sbjct 813966 TGCCGATGACGGCGAGGATAATTGCGCCACTGCCGACAAGATCGGAGGCATATTCTTCGA 813907 Query 23523 CGCCGAGGACTGGGCATCCGGAAAGGACGAGCTCGTCCAGAACGCCAAGAAGGTGTGGGC 23582 |||||| ||||||||||| || ||||| || || || |||||||||||| ||| ||||| Sbjct 813906 CGCCGAAGACTGGGCATCTGGCAAGGATGAACTTGTTCAGAACGCCAAGCGGGTTTGGGC 813847 Query 23583 CAAGGCAAAGCACGCCGGTGCGACCGTCTCCTATGACACGATCGGCGTCGGCGCCTTTNN 23642 ||| || || | | || ||||| ||||| || ||||||||||| || || || || Sbjct 813846 CAAAGCCAAACTCATGGGAGCGACAGTCTCTTACGACACGATCGGTGTGGGTGCTTTCGT 813787 Query 23643 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCAGCGTCGAGCATTTCGCATT 23702 ||| | || |||| | |||||| Sbjct 813786 CGGTGGCTACATCGATGAGCAGAACCGTGAAAACCAAGCGAAGGTTCAGCACTACGCATT 813727 Query 23703 CCACGCCGGCGGCGCGGTCATGGACCCGGACGAGCCGAGCGATGCGCAGAAT-GCCAACA 23761 ||| |||||||||||||| || || || ||||||||||| | | ||| | ||| | Sbjct 813726 CCATGCCGGCGGCGCGGTGGAAGATCCTGATAAGCCGAGCGATCCCTACAATCGGCAA-A 813668 Query 23762 GCCCGCTCAACAAGGACGAGTACCTGAACCTGAAGGCGCAGGCCTGGGCCAATACCGCGC 23821 |||||||||||||||||||||| ||||||| ||||| ||||| |||||||| || || | Sbjct 813667 GCCCGCTCAACAAGGACGAGTATCTGAACCGCAAGGCACAGGCGTGGGCCAACACGGCTC 813608 Query 23822 GTCGAGCCATGCTGACATTCAACGCTGTGGCCCGTGGCCACCCGATCAAGCCGGAGGACG 23881 | || || ||| |||| ||||| || ||| | || |||||| | |||||||| ||||||| Sbjct 813607 GCCGCGCGATGTTGACGTTCAATGCGGTGACGCGGGGCCACGCCATCAAGCCTGAGGACG 813548 Query 23882 TCCTGTCCTTCTCCTCGGCCATGGGCGTCAAGAAGCTGGATGCGCTCTTCACCGAGCTTT 23941 | || || ||||| |||| ||||| || || || || || || ||||||||||| | Sbjct 813547 TTCTATCGTTCTCTTCGGGGATGGGTGTTGCCAAACTCGACGCACTATTCACCGAGCTAT 813488 Query 23942 GCGTCCCTTGGTGGGTCGAGAGCGAAGGCAAGAAGCGGGTCGTGCCGAAACTGAAGCTCA 24001 |||| || |||||||| || | ||| ||||| || |||||||||||||| ||||||||| Sbjct 813487 GCGTGCCGTGGTGGGTTGAAACCGAGGGCAAAAAACGGGTCGTGCCGAAGGTGAAGCTCA 813428 Query 24002 AGAAGGACTTGGGCGTCAAATCTCACAACCTCGCTGACGCGGTGATCGCAGCGGACAA 24059 |||||||| ||||||| || ||||||||||| || || || |||||||| |||||||| Sbjct 813427 AGAAGGACCTGGGCGTGAAGTCTCACAACCTGGCGGATGCTGTGATCGCTGCGGACAA 813370 Score = 87.8 bits (96), Expect = 6e-13 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 18132 GAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGTC 18191 || ||| | || |||||| ||||| ||||| | || |||| || ||| || | || || Sbjct 592341 GAAATCACTGAAATCACCACCGGCCTGAAGGCCCTGGCCAAGGAACTCAATGTTCCCATC 592400 Query 18192 GTTTTGCTGTCGCAGCTTAATCGAG-CA-GTCGAGAGCAGAGAGGATAAGCGACCTCTTC 18249 | ||||||||||| ||| | || ||||| ||| | || || ||||| || | | Sbjct 592401 ATCGCACTGTCGCAGCT--GTCGCGTCAGGTCGAAAGCCGTGACGACAAGCGCCCGCAGC 592458 Query 18250 TCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGAC 18293 | || ||||||||||| || || |||||||||||||||| ||| Sbjct 592459 TGTCGGACCTTCGCGAATCGGGCTCGATCGAGCAGGACGCGGAC 592502 >seq3090 Length=9051 Score = 194 bits (214), Expect = 5e-45 Identities = 297/418 (71%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 10499 ATGGCTTTCTCAGTATCCAGAGCACCTTCCCAATGAT-CGAAACATCTTCTCCCTCTGTG 10557 ||||||| |||| ||||||||| |||||||| ||||| |||| | ||| || ||| Sbjct 4618 ATGGCTTCCTCAATATCCAGAGAACCTTCCCGATGATGCGAATGCT-TTCGCCAA-TGTT 4561 Query 10558 CTTT-CGTAGAGGAGAATTGGTTCCTGGTGAGCTGGGTCAGTGCTTTCCGGCCATAGTTC 10616 |||| | | |||| ||||| || || || ||||||||| ||||||||||||| || || Sbjct 4560 CTTTTCATTCAGGATGATTGGCTCTTGATGGGCTGGGTCATTGCTTTCCGGCCAAAGCTC 4501 Query 10617 AAAGCCCTTGGCGGTACGTCGAACACGTTTGGCCGTCCTCTGGACCATTTGACCGTAGTA 10676 |||| ||||| || |||||||| ||||| || | | || ||| ||||| | | Sbjct 4500 GTAGCCATTGGCTGTCATCCGAACACGCTTGGCTGTACGTTCGATCATCTGACCTTCAAA 4441 Query 10677 CTTGCGACGCTCGACGATCACGAGGTCGTTCTCGTTAATCTCCTCGACGGCCTTGATCAC 10736 || ||||| || ||||| || |||| || | || || || |||| |||| | Sbjct 4440 GCGGCTTCGCTCCACAATCACCAGATCGTCGGCGCTGATATCGACGCGGGCCATGATGAT 4381 Query 10737 ATCGAGGCATACAAGGATGTCGCCATGTGATGCGACTTTGTTCAGGCAGTTTCCGTCTAC 10796 | ||||| ||||| ||||||||| | || | ||||| |||||||| || || | Sbjct 4380 GTTCAGGCACACAAGTCGGTCGCCATGAGCAGCAATCTTGTTGAGGCAGTTCCCTTCGAT 4321 Query 10797 GCGAAGCCCGAATTGCCAGGCGGCGGGATACCCGCTGAGACTCGGGACAACTTCCATGTC 10856 || | || ||||| || | |||||||||| | ||| || || | |||| ||| Sbjct 4320 CTTTAGAGCAAACTGCCATTCGACTGGATACCCGCCCACACTAGGCACGAATTCCTCGTC 4261 Query 10857 CTCATATGTGAAATCCATTTCATCAACATCCATCCATGTGTTAGCGGCGACCTTGCCA 10914 ||||||| ||| ||||| || ||||| |||||| | || ||||| ||||||||| Sbjct 4260 CTCATATCCGAAGTCCATATCTTCAACGCTCATCCAGCTATTCGCGGCCACCTTGCCA 4203 >seq8050 Length=287393 Score = 96.9 bits (106), Expect = 1e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18132 GAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGTC 18191 || ||| || |||||||| | ||| | ||| |||| | || || ||| | || | || Sbjct 96458 GAAATCACCCAGATCACCACGGGCCTCAAGGCGCTGGGCAAGGAACTCAACGTCCCGATC 96399 Query 18192 GTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCTTCTC 18251 | |||||| ||||| || || || || ||| | || || ||||| || | || Sbjct 96398 ATCGCGCTGTCACAGCTCTCCCGTGCGGTGGAAAGCCGCGAAGACAAGCGTCCGCAGCTT 96339 Query 18252 TCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGTTC 18311 || ||||| || || ||||| | |||||||||||||||||| || | |||| ||||| Sbjct 96338 TCCGACCTGCGTGAATCCGGCTCCATCGAGCAGGACGCCGACGTGGTGCTGTTCGTGTTC 96279 Query 18312 CGTGAGGCCTACTACCTC 18329 ||||||| || ||| || Sbjct 96278 CGTGAGGAATATTACGTC 96261 Score = 86.0 bits (94), Expect = 2e-12 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 6 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATT 52 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257360 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATT 257314 >seq14232 Length=72504 Score = 95.1 bits (104), Expect = 4e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18122 TCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGA 18181 ||| ||||| || || | || || || || |||||| || | || | || || | Sbjct 61762 TCGCGTCAACGAAATTTCGGAAATTTCCCGTGGTTTGAAGACGTTGGCGAAGGAACTTCA 61821 Query 18182 TATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCG 18241 | || |||| | |||||||||||| | || || || || | ||||| ||||| Sbjct 61822 TGTCCCCGTGCTGGCGCTGTCGCAGCTCAGCCGTGCGGTGGAACAACGCGAGGACAAGCG 61881 Query 18242 ACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGC 18301 || | || || ||||||||||| || || |||||||||||||||| |||||| || Sbjct 61882 TCCGCAGCTGTCCGACCTTCGCGAATCGGGCTCGATCGAGCAGGACGCGGACATGGTCTG 61941 Query 18302 GTTCTTGTTCCGTGAGG 18318 |||| ||||||| |||| Sbjct 61942 GTTCGTGTTCCGCGAGG 61958 >seq10221 Length=130382 Score = 82.4 bits (90), Expect = 2e-11 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 18113 CAGCGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAG 18172 || || ||| || || | ||| || | |||||||| ||| | ||| | || |||| Sbjct 117960 CAACGCCAACCGCGTGCAGGAGGTCAGCCAGATCACCATGGGCCTCAAGGCCCTGGCCAA 117901 Query 18173 AGAGCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAG-AGCAG 18229 ||||| || | ||| | ||||||||||| ||| | ||| ||||| ||| | Sbjct 117900 GGAGCTGAGCGTCCCGGTCATCGCCCTGTCGCAGCTG--TCGCGTCAGGTCGAGCAGC-G 117844 Query 18230 AGAGGATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGC 18289 || || ||||| || | || || ||||| || || ||||| |||||||||||||||| Sbjct 117843 CGACGACAAGCGGCCGCAGCTTTCCGACCTGCGTGAATCCGGCTCGATCGAGCAGGACGC 117784 Query 18290 CGACATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCGAACGCG 18336 ||||||| || |||| | | || || |||||| |||| |||| Sbjct 117783 CGACATGGTCTGGTTCGTCTATCGCGAAAGCTACTATCTCGGCCGCG 117737 >seq8280 Length=144189 Score = 82.4 bits (90), Expect = 2e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 6 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTTTC 55 ||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 40622 CTGGGGGGCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTCTC 40573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162495736401062