Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_029057.1
Length=134742
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 84.2 2e-11
>seq11759
Length=158816
Score = 84.2 bits (92), Expect = 2e-11
Identities = 193/284 (68%), Gaps = 24/284 (8%)
Strand=Plus/Plus
Query 130453 GAAGCTAAAGGCTATGCAGCTA-TGGT-TGTTCTT-GGTGTTGGTAGTTACTCATATCAA 130509
||||| || |||||||| | | | | || |||| || | |||||||| | ||| |
Sbjct 60966 GAAGCGAAGGGCTATGCTTCAAATAATCTGGTCTTTGGCATCGGTAGTTATACTTATAAC 61025
Query 130510 TACGTAACTCGTGATACACATGGGTCTGCTGTAAAAGCAACTTGGGTTGAGAAGGCTGGT 130569
|| |||| ||||| ||| ||| | ||| || ||||| ||||||| || ||| |
Sbjct 61026 TATTTAACACGTGACACATTTGGTTTTGCAGTTAAAGCCACTTGGG--GACAAGTC---- 61079
Query 130570 AAGGGTGTG------GATGTATTCAAAGACCCTAAAACAGACA---GTAAGAAGAAATCT 130620
|| ||||| || |||| ||||| || | || || ||| |||||||||
Sbjct 61080 AACGGTGTTCCACGTGAATTATTTAAAGATCCGATCACTGATTCTGGTATAAAGAAATCT 61139
Query 130621 GCAAAAGGGTTACTACGTATTGAAAAA---GAAAACGGTAAGTATGTAGTGTATGATCAG 130677
|| ||||| ||||| ||| | |||||| ||| | || | ||| | | |||||||
Sbjct 61140 GCCAAAGGTTTACTTCGTGTAGAAAAAACTGAAGATGG---ATTTGTGTTATTTGATCAG 61196
Query 130678 CAAACACCAGAACAAGAAAAACAAGGTTTGTTAGAAACTGTATT 130721
||||| |||||||| |||||||| |||| |||| || ||
Sbjct 61197 CAAACCATGGAACAAGAGCAACAAGGTGAGTTAAAAACGGTGTT 61240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430970488793397
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |