Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029057.1 Length=134742 Score E Sequences producing significant alignments: (Bits) Value seq11759 84.2 2e-11 >seq11759 Length=158816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/284 (68%), Gaps = 24/284 (8%) Strand=Plus/Plus Query 130453 GAAGCTAAAGGCTATGCAGCTA-TGGT-TGTTCTT-GGTGTTGGTAGTTACTCATATCAA 130509 ||||| || |||||||| | | | | || |||| || | |||||||| | ||| | Sbjct 60966 GAAGCGAAGGGCTATGCTTCAAATAATCTGGTCTTTGGCATCGGTAGTTATACTTATAAC 61025 Query 130510 TACGTAACTCGTGATACACATGGGTCTGCTGTAAAAGCAACTTGGGTTGAGAAGGCTGGT 130569 || |||| ||||| ||| ||| | ||| || ||||| ||||||| || ||| | Sbjct 61026 TATTTAACACGTGACACATTTGGTTTTGCAGTTAAAGCCACTTGGG--GACAAGTC---- 61079 Query 130570 AAGGGTGTG------GATGTATTCAAAGACCCTAAAACAGACA---GTAAGAAGAAATCT 130620 || ||||| || |||| ||||| || | || || ||| ||||||||| Sbjct 61080 AACGGTGTTCCACGTGAATTATTTAAAGATCCGATCACTGATTCTGGTATAAAGAAATCT 61139 Query 130621 GCAAAAGGGTTACTACGTATTGAAAAA---GAAAACGGTAAGTATGTAGTGTATGATCAG 130677 || ||||| ||||| ||| | |||||| ||| | || | ||| | | ||||||| Sbjct 61140 GCCAAAGGTTTACTTCGTGTAGAAAAAACTGAAGATGG---ATTTGTGTTATTTGATCAG 61196 Query 130678 CAAACACCAGAACAAGAAAAACAAGGTTTGTTAGAAACTGTATT 130721 ||||| |||||||| |||||||| |||| |||| || || Sbjct 61197 CAAACCATGGAACAAGAGCAACAAGGTGAGTTAAAAACGGTGTT 61240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970488793397