Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq1182 205 3e-48 seq11465 96.9 1e-15 >seq1182 Length=446 Score = 205 bits (226), Expect = 3e-48 Identities = 193/246 (78%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 23890 GCTCCGGGACAAGCTGTGGCGCCTGAACAACCTGTATTTCATCACCGACAAGGCAGGCAA 23949 |||||||||| | | ||||| |||||||||||||| |||||||| |||||| ||||| Sbjct 247 GCTCCGGGACCGGTTCTGGCGGCTGAACAACCTGTACTTCATCACGGACAAGCAGGGCAA 188 Query 23950 GAAGACTCGCTTCCGCATGACAGCGGAGCAGTTGGAGTATTTCGAAGGCCTGCACACTCG 24009 |||| |||||||||||||| ||||||| | || || ||| | || ||||||| || Sbjct 187 GAAGGTCCGCTTCCGCATGACGCAGGAGCAGGTCGATTACTTCCAGGGGATGCACACCCG 128 Query 24010 GAACATCATCCTGAAGGCACGCCAGCTCGGCTTTACGACTGAGCAGTGCATCATTCAACT 24069 ||||||||||| ||||| | ||||| || || || || |||||| | || || Sbjct 127 CAACATCATCCTCAAGGCCAGGCAGCTTGGGTTCACTACCCTAGTCTGCATCGTCCAGCT 68 Query 24070 GGACGCGGCGCTGTTCGAGTCGGCCAAGTGCGCGCTGATTGCTCACACCCTGAATGATGC 24129 ||| || |||||||||||| | ||||||||||| ||||| || ||||||||||| || || Sbjct 67 GGATGCCGCGCTGTTCGAGGCCGCCAAGTGCGCCCTGATAGCCCACACCCTGAACGACGC 8 Query 24130 CAAGCG 24135 |||||| Sbjct 7 CAAGCG 2 >seq11465 Length=2819 Score = 96.9 bits (106), Expect = 1e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 24277 CGGCACGCTGCGTTACCTGCACGTCTCCGAGTTCGGAAAGATCTGCGCCAAGTTTCCGCA 24336 ||||||||||| ||||||||||||||||| | ||| |||||||||||||| | |||| | Sbjct 2458 CGGCACGCTGCAGTACCTGCACGTCTCCGAATACGGCAAGATCTGCGCCAAATATCCGGA 2399 Query 24337 CAAGGCGCGCGAG 24349 ||||||||||||| Sbjct 2398 CAAGGCGCGCGAG 2386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155581773016024